View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_high_33 (Length: 274)
Name: NF13789_high_33
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 32330618 - 32330373
Alignment:
| Q |
17 |
aggtacggcacgtgagacagttacgcggtgaaagtacgtcacgtgcggcgggcctgtggaaaaagaagcctgagtgttgggcttcatttttcttcaatga |
116 |
Q |
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| T |
32330618 |
aggtacggcacgtgagacagttacgcggtgaaagtacgtcacgtgcggcggacctgtggaaaaagaagcctgagtgttgggcttcatttttcttcaatga |
32330519 |
T |
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| Q |
117 |
ggcttggtcatgaacagagttgaaccnnnnnnnnnnnnnnnnnaataaaaacagagttgaacttggtcacctactatctcttcttcattcagcaacactn |
216 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32330518 |
ggcttggtcatgaacagagttgaacc---ttttttttttttttaataaaaacagagttgaacttggtcacctactatctcttcttcattcagcaacact- |
32330423 |
T |
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| Q |
217 |
nnnnnncaaataaagattacttaattttcaaccttaaatgttagtattat |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32330422 |
agaaaacaaataaagattacttaattttcaaccttaaatgttagtattat |
32330373 |
T |
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