View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_high_36 (Length: 256)
Name: NF13789_high_36
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 51303494 - 51303635
Alignment:
| Q |
28 |
tcgccaagaccaccaaactccgacagaaaaagtgatagcatgggaacccttagtttcccctttaagccact-gtaagcatcagtagaagagaagaaatca |
126 |
Q |
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| T |
51303494 |
tcgccaagatcaccaaactccgacagaaaaagtgatagcatgggaacccttagttccccctttaagccactcgtaagcatcaatagaagagaagaattca |
51303593 |
T |
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| Q |
127 |
agattggtgaaacctaagtggtgccataacattgcggagaaa |
168 |
Q |
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| T |
51303594 |
ggattagtgaaacctaagtggtgccataacatagcagagaaa |
51303635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 5204466 - 5204528
Alignment:
| Q |
28 |
tcgccaagaccaccaaactccgacagaaaaagtgatagcatgggaacccttagtttccccttt |
90 |
Q |
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| T |
5204466 |
tcgccaagaccaccaaactccgacataaaaagtgatagcatgggaacccttagttcccccttt |
5204528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 9536282 - 9536153
Alignment:
| Q |
28 |
tcgccaagaccaccaaactccgacagaaaaagtgatagcatgggaacccttagtttcccctttaagccact-gtaagcatcagtagaagagaagaaatca |
126 |
Q |
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||||||||||||||||||||| ||||| ||||||||||| | |||||||||| | || | ||||||| | |||| ||||| ||||||| || |||| |
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| T |
9536282 |
tcgccaagaccaccaaactccaacagagaaagtgatagcctaagaacccttagctccctttctaagccattcgtaaacatcaatagaagaaaaagaatcc |
9536183 |
T |
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| Q |
127 |
agattggtgaaacctaagtggtgccataac |
156 |
Q |
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| T |
9536182 |
gcattagtgaaacctaagtggttccataac |
9536153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 29 - 245
Target Start/End: Original strand, 35061646 - 35061863
Alignment:
| Q |
29 |
cgccaagaccaccaaactccgacagaaaaagtgatagcatgggaacccttagtttcccctttaagccactg-taagcatcagtagaagagaagaaatcaa |
127 |
Q |
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|||||||||||||||||||| |||||||||||| |||| || |||||||||| | ||| ||||||| | |||||||| || ||||||| |||||| |
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| T |
35061646 |
cgccaagaccaccaaactcccacagaaaaagtgttagcctgagaacccttagctcccctcctaagccaatcataagcatccataaaagagaaaaaatcat |
35061745 |
T |
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| Q |
128 |
gattggtgaaacctaagtggtgccataacattgcggagaaagtaaagtcacgaacacaatgtataaaggtctcattttaaagaccgcagcgagagcaagt |
227 |
Q |
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| T |
35061746 |
gattagtgaaacctaagtggtgccataacaaagtggagaaagtacagtcatgaacacaatggagaaaggtatcgttctggagacggcaacgagagcaagt |
35061845 |
T |
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| Q |
228 |
agccgaaggagctaaatt |
245 |
Q |
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||| |||||||||||||| |
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| T |
35061846 |
agcagaaggagctaaatt |
35061863 |
T |
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