View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_high_43 (Length: 212)
Name: NF13789_high_43
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 8295269 - 8295082
Alignment:
| Q |
17 |
atatcaaactctttaatcgctgagcttaatggagccatgatggcaattgaatttgcttctcaaaaggggtggcatcacctttggctagaaacagattcta |
116 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8295269 |
atatcaaactctttgatcgccgagcttaatggagccatgatggcaattgaattcgcttctcaaaaggggtggcatcacctttggctagaaacagattcta |
8295170 |
T |
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| Q |
117 |
tgttggtaactgcagctttcaagtctatcacgatcgttccttggcacttaagaaatagatggcaaaattgtcttcatctctgctcctc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8295169 |
tgttggtaactgcagctttcaagtctatcacgatcgttccttggcacttaagaaatagatggcaaaattgttttcatctctgctcctc |
8295082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 27727530 - 27727717
Alignment:
| Q |
17 |
atatcaaactctttaatcgctgagcttaatggagccatgatggcaattgaatttgcttctcaaaaggggtggcatcacctttggctagaaacagattcta |
116 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27727530 |
atatcaaactctttgattgctgagcttaatggagccatgatggcaattgaattcgcttctcaaaaggggtggcatcacctttggctagaaacagattcta |
27727629 |
T |
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| Q |
117 |
tgttggtaactgcagctttcaagtctatcacgatcgttccttggcacttaagaaatagatggcaaaattgtcttcatctctgctcctc |
204 |
Q |
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| T |
27727630 |
tgttggtaactgcagctttcaagtctatcacgatcgttctttggcacttaagaaatagatggcaaaattgtcttcatctctgctcctc |
27727717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 22162439 - 22162252
Alignment:
| Q |
17 |
atatcaaactctttaatcgctgagcttaatggagccatgatggcaattgaatttgcttctcaaaaggggtggcatcacctttggctagaaacagattcta |
116 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22162439 |
atatcaaactctttgatcgcagagcttaatggagccatgatggcaattgaattcgcttctcaaaaggggtggcatcacctttggctagaaacagattcta |
22162340 |
T |
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| Q |
117 |
tgttggtaactgcagctttcaagtctatcacgatcgttccttggcacttaagaaatagatggcaaaattgtcttcatctctgctcctc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22162339 |
tgttggtaactgcagctttcaagtctatcacgatcgttccttggcacttaagaaatagatggcaaaattgtattcatctctgctcctc |
22162252 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 6642942 - 6642979
Alignment:
| Q |
152 |
gttccttggcacttaagaaatagatggcaaaattgtct |
189 |
Q |
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| T |
6642942 |
gttccttggcagttaagaaatagatgggaaaattgtct |
6642979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 18621127 - 18621168
Alignment:
| Q |
86 |
tggcatcacctttggctagaaacagattctatgttggtaact |
127 |
Q |
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| T |
18621127 |
tggcatcaccattggctagaaacggattccatgttggtaact |
18621168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 12033040 - 12032987
Alignment:
| Q |
130 |
agctttcaagtctatcacgatcgttccttggcacttaagaaatagatggcaaaa |
183 |
Q |
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|||||||||||| |||| || |||||||||||| |||||||||| |||||||| |
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| T |
12033040 |
agctttcaagtcgatcaaaattgttccttggcacctaagaaataggtggcaaaa |
12032987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 14636647 - 14636700
Alignment:
| Q |
130 |
agctttcaagtctatcacgatcgttccttggcacttaagaaatagatggcaaaa |
183 |
Q |
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|||||||||||| |||| || |||||||||||| |||||||||| |||||||| |
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| T |
14636647 |
agctttcaagtcgatcaaaattgttccttggcacctaagaaataggtggcaaaa |
14636700 |
T |
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