View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_high_5 (Length: 631)
Name: NF13789_high_5
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 21 - 620
Target Start/End: Complemental strand, 38246852 - 38246247
Alignment:
| Q |
21 |
ttatgttgtagcatgaacatgaaaatgaactagagaagattaaataaaacaaaactaacccaagagctctggaaaatggagtagcaggaaccttcctctc |
120 |
Q |
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| T |
38246852 |
ttatgttgtagcatgaacatgaaaatgaattagagaagattaaataaaacaaaactaacccaagagctctggaaaatggagtagcaggaaccttcctctc |
38246753 |
T |
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| Q |
121 |
cctcggccttcgtttcctcaccggcacttcctcactcgtagttccaccttgcttaaccgtttcactagaactcacaacctcactttcattccccggcgtg |
220 |
Q |
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| T |
38246752 |
cctcggccttcgtttcctcaccggcacttcctcgctcgtagttccaccttgcttaaccgtttcactagaactcacaacctcactttcattccccgccgtg |
38246653 |
T |
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| Q |
221 |
gcacaaacagttgcatcggtagtttccactggtcgattcgtttcattagaaacctcagcaaaaacgtcattattcgtaactacttctatctttgtagttg |
320 |
Q |
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| T |
38246652 |
gcacaaacagttgcatcggtagtttccactggtcgattcgtttcattagaaacctcagcaaaaacgtcattattcgtaactacttctatctttgtagttg |
38246553 |
T |
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| Q |
321 |
ccggtgac------ggtggcggtggtgttgaatcgggtgcagaagaagaaggttgatcggagaaaacaacaacggaaggagtactggaagaagaatcgga |
414 |
Q |
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| T |
38246552 |
ccggtgacggtgacggtggcggtggtgttgaatcgggtgcagaagaagaaggttgatcggagaaaacaacaacggaaggagtactggaagaagaatcgga |
38246453 |
T |
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| Q |
415 |
ggaagagtcgttggagggttgaggaggggagaattgacgaagttgtcctttggtgatgccggagacgttggtggcggagagaagagcggttttaattagg |
514 |
Q |
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| T |
38246452 |
ggaagagtcgttggagggttgaggaggggagaattgacgaagttgtcctttggtgatgccggagacgttggtggcggagagaagagcggttttaattagg |
38246353 |
T |
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| Q |
515 |
gtttcgaaatctgaagttctggcgggtaatgaacgtttggcatattcgttagcgattaaagtgagaccgttgaatagtctcgtaagatccttcgtcgatg |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38246352 |
gtttcgaaatctgaagttctggcgggtaatgaacgtttggcatattcgttagcgattaaagtgagaccgttgaatagtctcgtaagatccttcgtcgatg |
38246253 |
T |
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| Q |
615 |
atgatg |
620 |
Q |
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|||||| |
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| T |
38246252 |
atgatg |
38246247 |
T |
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