View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13789_low_10 (Length: 530)

Name: NF13789_low_10
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13789_low_10
NF13789_low_10
[»] scaffold0009 (1 HSPs)
scaffold0009 (13-215)||(143684-143889)
[»] chr2 (3 HSPs)
chr2 (13-210)||(36698746-36698944)
chr2 (213-268)||(22136277-22136333)
chr2 (392-480)||(22136463-22136550)
[»] chr1 (4 HSPs)
chr1 (213-285)||(41323360-41323433)
chr1 (215-286)||(27840307-27840379)
chr1 (213-283)||(47250287-47250358)
chr1 (215-286)||(50293627-50293699)
[»] chr8 (6 HSPs)
chr8 (215-285)||(42308123-42308194)
chr8 (213-284)||(19970426-19970498)
chr8 (213-284)||(21022311-21022383)
chr8 (215-269)||(16367861-16367916)
chr8 (232-269)||(44656387-44656424)
chr8 (398-446)||(16367782-16367830)
[»] chr3 (2 HSPs)
chr3 (397-499)||(53550903-53551004)
chr3 (215-266)||(53550730-53550781)
[»] chr5 (2 HSPs)
chr5 (215-266)||(4082576-4082628)
chr5 (215-266)||(16349715-16349767)


Alignment Details
Target: scaffold0009 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 143889 - 143684
Alignment:
Q  13 aaaatatatgcaactcggtgcttcattgagaagacaatatgcaagacatctggcttcaatatgctctaattaataaattagttgtattatttgaacaaca 112  Q
    |||||||||||||| || ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||||||    
T  143889 aaaatatatgcaacacgttgcttcattgagaagacaatatgcaagccatctagcttcaaaatgctctaattaataaatcagttgtattatttgaacaaca 143790  T
Q  113 aaatacaaatataagctctaattaatatatgtttatggttctgttttcactttgtaatgtagcataaggataagtata---ataaactagattaagatct 209  Q
    ||||||||||||| |||||||||||||||| | ||||||| ||||||||||||||||||||||||  |||||||||||   |||||||||||||||||||    
T  143789 aaatacaaatatatgctctaattaatatatatgtatggttatgttttcactttgtaatgtagcattgggataagtataataataaactagattaagatct 143690  T
Q  210 tccata 215  Q
    ||||||    
T  143689 tccata 143684  T

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Target: chr2 (Bit Score: 121; Significance: 9e-62; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 36698944 - 36698746
Alignment:
Q  13 aaaatatatgcaactcggtgcttcattgagaagacaatatgcaagacatctggcttcaatatgctctaattaataaattagttgtattatttgaacaaca 112  Q
    |||||||||||||| |  ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| | |||||||||||||||||||||    
T  36698944 aaaatatatgcaacacattgctttattgagaagacaatatgcaagccatctggcttcaagatgctctaattaataa-tcagttgtattatttgaacaaca 36698846  T
Q  113 aaatacaaatataagctctaatta--atatatgtttatggttctgttttcactttgtaatgtagcataaggataagtataataaactagattaagatctt 210  Q
    |||| |||||||| || |||| ||  |||||||| ||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  36698845 aaattcaaatatacgccctaagtataatatatgtctatggttctattttcactttatcatgtagcataaggataagtataataaactagattaagatctt 36698746  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 22136277 - 22136333
Alignment:
Q  213 atactagatcgtccaccc-tgctaccgcacgggacatatatagtttaagacattact 268  Q
    |||||||||||||||||| || | ||||||||| |||||||||||||||||||||||    
T  22136277 atactagatcgtccacccgtgttgccgcacgggtcatatatagtttaagacattact 22136333  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 480
Target Start/End: Original strand, 22136463 - 22136550
Alignment:
Q  392 catgtggttaattgcacttggaaaatattatacacatgcatacttattggaaacagttctaatagtgaatttaaatctaatgatatcaa 480  Q
    |||||||| ||||||  |||||||||||||||||||  ||||| |||| |   || ||||||||||||| |||||| | ||||||||||    
T  22136463 catgtggtgaattgcgtttggaaaatattatacacaatcatacctattagtgccaattctaatagtgaa-ttaaatgtgatgatatcaa 22136550  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 41323360 - 41323433
Alignment:
Q  213 atactagatcgtccaccc-tgctaccgcacgggacatatatagtttaagacattactttcaattcattataata 285  Q
    |||||||||||| || || |||| ||||||||| ||||||||||| || ||||||||| |||||||||||||||    
T  41323360 atactagatcgtacatccatgctgccgcacgggtcatatatagttaaaaacattacttgcaattcattataata 41323433  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 27840307 - 27840379
Alignment:
Q  215 actagatcgtccaccc-tgctaccgcacgggacatatatagtttaagacattactttcaattcattataatat 286  Q
    ||||||||||| |||| ||||  |||||||| ||| |||||||||| ||||||||| ||||||||||||||||    
T  27840307 actagatcgtctacccgtgctgtcgcacgggtcatttatagtttaaaacattacttgcaattcattataatat 27840379  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 47250358 - 47250287
Alignment:
Q  213 atactagatcgtccaccct-gctaccgcacgggacatatatagtttaagacattactttcaattcattataa 283  Q
    ||||||||||||||| ||  ||| ||||||||| ||||||||||| || ||||||||| |||||||||||||    
T  47250358 atactagatcgtccatccgagctgccgcacgggtcatatatagttaaaaacattacttgcaattcattataa 47250287  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 50293699 - 50293627
Alignment:
Q  215 actagatcgtccaccc-tgctaccgcacgggacatatatagtttaagacattactttcaattcattataatat 286  Q
    ||||||||||| |||| |||| ||||||||| |||||||||||||  |  |||||| ||||||||||||||||    
T  50293699 actagatcgtctacccatgctgccgcacgggtcatatatagtttagcatgttacttgcaattcattataatat 50293627  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 42308123 - 42308194
Alignment:
Q  215 actagatcgtccaccc-tgctaccgcacgggacatatatagtttaagacattactttcaattcattataata 285  Q
    |||||||||||||||  |||| ||||||||| ||||||||||| || ||||||||| ||||| |||||||||    
T  42308123 actagatcgtccacctgtgctgccgcacgggtcatatatagttaaaaacattacttacaatttattataata 42308194  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 19970498 - 19970426
Alignment:
Q  213 atactagatcgtccaccc-tgctaccgcacgggacatatatagtttaagacattactttcaattcattataat 284  Q
    ||||||||||||| |||| |||  | ||||||| |||||||||||||  ||||||||| ||||||||||||||    
T  19970498 atactagatcgtctacccgtgcggcagcacgggtcatatatagtttagtacattacttgcaattcattataat 19970426  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 21022311 - 21022383
Alignment:
Q  213 atactagatcgtccaccc-tgctaccgcacgggacatatatagtttaagacattactttcaattcattataat 284  Q
    ||||||||||||| |||| |||  | ||||||| |||||||||||||  ||||||||| ||||||||||||||    
T  21022311 atactagatcgtctacccgtgcggcagcacgggtcatatatagtttagtacattacttgcaattcattataat 21022383  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 16367916 - 16367861
Alignment:
Q  215 actagatcgtccaccc-tgctaccgcacgggacatatatagtttaagacattactt 269  Q
    ||||||||||| |||| |||| ||||||||| |||||||||||||| |||||||||    
T  16367916 actagatcgtctacccgtgctgccgcacgggtcatatatagtttaaaacattactt 16367861  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 44656387 - 44656424
Alignment:
Q  232 gctaccgcacgggacatatatagtttaagacattactt 269  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  44656387 gctaccgcacgggtcatatatagtttaaaacattactt 44656424  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 446
Target Start/End: Complemental strand, 16367830 - 16367782
Alignment:
Q  398 gttaattgcacttggaaaatattatacacatgcatacttattggaaaca 446  Q
    |||||||||| ||||||||||||||||| | |||||| | |||||||||    
T  16367830 gttaattgcatttggaaaatattatacatacgcatacattttggaaaca 16367782  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 499
Target Start/End: Original strand, 53550903 - 53551004
Alignment:
Q  397 ggttaattgcacttggaaaatattatacacatgcatacttattggaaacagttctaatagtg-aatttaaatctaatgatatcaattcaaaatccttgtt 495  Q
    ||||||||||||||||||||||||||||| | |||||| | ||||||||   ||   || || || ||  |||||||||||||||||| |||||||||||    
T  53550903 ggttaattgcacttggaaaatattatacatacgcatacattttggaaacgcatcc--tactgcaacttccatctaatgatatcaattcgaaatccttgtt 53551000  T
Q  496 gttc 499  Q
    ||||    
T  53551001 gttc 53551004  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 53550730 - 53550781
Alignment:
Q  215 actagatcgtccaccctgctaccgcacgggacatatatagtttaagacatta 266  Q
    ||||||||||| |||||||||| ||||| | |||||||||||||| ||||||    
T  53550730 actagatcgtctaccctgctactgcacgagtcatatatagtttaaaacatta 53550781  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 4082628 - 4082576
Alignment:
Q  215 actagatcgtccaccc-tgctaccgcacgggacatatatagtttaagacatta 266  Q
    |||||||||||||||| |||| ||||||||| ||||||||||| || ||||||    
T  4082628 actagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacatta 4082576  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 16349715 - 16349767
Alignment:
Q  215 actagatcgtccaccc-tgctaccgcacgggacatatatagtttaagacatta 266  Q
    |||||||||||||||| |||| ||||||||| ||||||||||| || ||||||    
T  16349715 actagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacatta 16349767  T

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