View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_low_11 (Length: 508)
Name: NF13789_low_11
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 1696471 - 1696050
Alignment:
| Q |
1 |
ttcagcgtgttttctgtttcgcattctttgtgcagnnnnnnntggtgaaccaatcagcaatccgtaccgttgttggtatcataggtttgttaatcacttc |
100 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1696471 |
ttcagtgtgttttctgtttcgcattctttgtgcagaaaaaaatggtgaaccaatcagcaattcgtaccgttgttggtatcataggtttgttaatcacttc |
1696372 |
T |
|
| Q |
101 |
ttcttctcttttcagtatcatttcagtttattttaactttttctcataatcgattatcatgcatgcatgcataaagtataattttaactttttctgataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1696371 |
ttcttctcttttcagtatcatttcagtttattttaactttttatcataatcgattatcatgcatgcatgcataaagtataattttaactttttctgataa |
1696272 |
T |
|
| Q |
201 |
tcgattttagaagtctttagttcagttacgattgattttagctttttatgttaatcgattaatcatacatgtttctgattgatttttgtgaaatttgaat |
300 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1696271 |
tcgattttggaagtttttagttcagttacgattgattttagctttttatgttaatcgattaatcatacatgtttctgattgatttttgtgaaatttgaat |
1696172 |
T |
|
| Q |
301 |
gcagggaatgttatctcgtttggactgttcttctcaccagcgtaatcaattaaactctctctttctctgtttattactttgttttggtgtttacgtgaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1696171 |
gcagggaatgttatctcgtttggactgttcttctcaccagcgtaatcaattaaactctctctttctctgtttattactttgttttggtgtttacgtgaat |
1696072 |
T |
|
| Q |
401 |
atagcgtaatttgttatgctat |
422 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
1696071 |
atagcgtaatttgttatgctat |
1696050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 63 - 403
Target Start/End: Complemental strand, 1685852 - 1685520
Alignment:
| Q |
63 |
cgtaccgttgttggtatcataggtttgttaatcacttcttcttctcttttcagtatcatttcagtttattttaactttttctcataatcgattatcatgc |
162 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
1685852 |
cgtaccattgttggtatcataggtttgttaatcacttcttcttctcttttcagt-----------ttattttaactttttatcataatcgattatcatgc |
1685764 |
T |
|
| Q |
163 |
atgcatgcataaagtataattttaactttttctgataatcgattttagaagtctttagttcagttacgattgattttagctttttatgttaatcgattaa |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1685763 |
atgcatgcataaagtataattttaactttttctgataatcgatttttgaagtttttagttcagttacgattgattttagctttttgtgttaatcgattaa |
1685664 |
T |
|
| Q |
263 |
tcatacatgtttctgattgat--ttttgtgaaa-tttgaatgcagggaatgttatctcgtttggactgttcttctcaccagcgtaatcaattaaactctc |
359 |
Q |
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||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| |
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| T |
1685663 |
tcatacatgtttctgattgatttttttctgaaattttgaatgaagggaatgttatctcgtttggactgttcttcgcaccagggtaactaattaaactctc |
1685564 |
T |
|
| Q |
360 |
tctttctctgtttattactttgttttggtgtttacgtgaatata |
403 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
1685563 |
tctttctctatttattactttgttttgttgtttacgtgaatata |
1685520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1685904 - 1685870
Alignment:
| Q |
1 |
ttcagcgtgttttctgtttcgcattctttgtgcag |
35 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |
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|
| T |
1685904 |
ttcagtgtgttttctgtttcgcattctttgtgcag |
1685870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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