View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_low_13 (Length: 494)
Name: NF13789_low_13
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 8 - 478
Target Start/End: Original strand, 7406413 - 7406881
Alignment:
| Q |
8 |
agattattcttgagaaaagaatcaaaggaattcaattatctcttgagatggttgattctgccagattagtgtaccttaagcaggaacttcaacaagaata |
107 |
Q |
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| T |
7406413 |
agattattcttgagaaaagaatcaaaggaattcaattatctcttgagatggtttattctgccagattagtgtaccttaagcaggaacttcaacaagaata |
7406512 |
T |
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| Q |
108 |
tgatagagtacttttccaagaggaactccattggtaccaatggtctaaggaaaaatggatcaagtgtgaggattaaaataccaagtattttcacgctcag |
207 |
Q |
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| T |
7406513 |
tgatagagtacttttccaagaggaactccattggtaccaatggtctaaggaaaaatggatcaagtgtgaggattaaaataccaagtattttcacgctcag |
7406612 |
T |
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| Q |
208 |
acggttatttgaagaaaaaacgtaatagaatccatgtgcttcaccttgctaacgacatatggtgtacgaatgatgatttactgaaagatgaggcgtagag |
307 |
Q |
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| T |
7406613 |
acggttatttgaagaaaa--cgtaatagaatccatgtgcttcaccttgctaacgacatatggtgtacgaatgatgatttactgaaagatgaggtgtagag |
7406710 |
T |
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| Q |
308 |
atatttcaattaattgttttgtagctcttcacaacagaaaaatggagttccacctagtgattgattgcatgatcccaaactttctaaggagactactatt |
407 |
Q |
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| T |
7406711 |
atatttcaagtaattgttttgtagctcttcacaacaaaaaaatggtgttccacctagtgattgattgcatgatcccaaactttctaaggaggctactatt |
7406810 |
T |
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| Q |
408 |
actttgactcaagtggtagtcaaggggatcctctctccccttatcattttgtgatttgtatggagcttttg |
478 |
Q |
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| T |
7406811 |
actttgactcaagtggtagtcaaggggatcctctctccccttatcattttgtgatttgtatggagtttttg |
7406881 |
T |
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