View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_low_14 (Length: 453)
Name: NF13789_low_14
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 9333390 - 9333112
Alignment:
| Q |
8 |
agattatactgtgtgaggtgcttaaaggttttggggttagacagagtttttaatttttacgatttatgtcttggttctcataataaaaatgaagttaccg |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | |
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| T |
9333390 |
agattctactgtgtgaggtgcttaaaggttttggggttagacagagtttttaatttttacgatttatgtcttgg-------------aatgaagttgcag |
9333304 |
T |
|
| Q |
108 |
aaaatttaaggagcaaaaaattctgcaaaatctaaatgtcctcaattccactttgttggggttgcaagttaagaggagatgacgagagggagagtggtgg |
207 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9333303 |
aaaatttaaggaccaaaaaattctgcaaaatctaactgtcctcaattccactttgttggggttgcaagttaagaggagatgacgagggggagagtggtgg |
9333204 |
T |
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| Q |
208 |
ggttcacatatgttaagcataagatgagtatgggtttctatgggttggattatgtgatgagagaagttgtaacttaatgtgtgagttgttat |
299 |
Q |
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| T |
9333203 |
ggttcacatatgttaagcataagatgagtatgggtttctatgggttggattatgtgatgagagaagttgtaacttaatgtgtgagttgttat |
9333112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 361 - 432
Target Start/End: Complemental strand, 9333049 - 9332978
Alignment:
| Q |
361 |
ttgttcttaacttccacagagaatgaaattgtaaacttaaattagatgcatagtgaaatttgggagttccat |
432 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9333049 |
ttgttcttaacttccacagaaaatgaaattgtaaacttaaattagatgcatagtgaaatttgggagttccat |
9332978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 30562228 - 30561950
Alignment:
| Q |
8 |
agattatactgtgtgaggtgcttaaaggttttggggttagacagagtttttaatttttacgatttatgtcttggttctcataataaaaatgaagttaccg |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | |
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| T |
30562228 |
agattctactgtgtgaggtgcttaaaggttttggggttagacagagtttttaatttttacgatttatgtcttgg-------------aatgaagttgcag |
30562142 |
T |
|
| Q |
108 |
aaaatttaaggagcaaaaaattctgcaaaatctaaatgtcctcaattccactttgttggggttgcaagttaagaggagatgacgagagggagagtggtgg |
207 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
30562141 |
aaaatttaaggaccaaaaaattctgcaaaatctaactgtcctcaattccactttgttggggttgcaagttaagaggagatgatgagggggagagtggtgg |
30562042 |
T |
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| Q |
208 |
ggttcacatatgttaagcataagatgagtatgggtttctatgggttggattatgtgatgagagaagttgtaacttaatgtgtgagttgttat |
299 |
Q |
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| T |
30562041 |
ggttcacatatgttaagcataagatgagtatgggtttctatgggttggattatgtgatgagagaagttgtaacttaatgtgtgagttgttat |
30561950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 54902021 - 54901743
Alignment:
| Q |
8 |
agattatactgtgtgaggtgcttaaaggttttggggttagacagagtttttaatttttacgatttatgtcttggttctcataataaaaatgaagttaccg |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | |
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| T |
54902021 |
agattctactgtgtgaggtgcttaaaggttttggggttagacagagtttttaatttttacgatttatgtcttgg-------------aatgaagttgcag |
54901935 |
T |
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| Q |
108 |
aaaatttaaggagcaaaaaattctgcaaaatctaaatgtcctcaattccactttgttggggttgcaagttaagaggagatgacgagagggagagtggtgg |
207 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
54901934 |
aaaatttaaggaccaaaaaattctgcaaaatctaactgtcctcaattccactttgttggggttgcaagttaagaggatatgacgagggggagagtggtgg |
54901835 |
T |
|
| Q |
208 |
ggttcacatatgttaagcataagatgagtatgggtttctatgggttggattatgtgatgagagaagttgtaacttaatgtgtgagttgttat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54901834 |
ggttcacatatgttaagcataagatgagtatgggtttctatgggttggattatgtgatgagagaagttgtaacttaatgtgtgagttgttat |
54901743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 361 - 432
Target Start/End: Complemental strand, 30561887 - 30561816
Alignment:
| Q |
361 |
ttgttcttaacttccacagagaatgaaattgtaaacttaaattagatgcatagtgaaatttgggagttccat |
432 |
Q |
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| T |
30561887 |
ttgttcttaacttccacagaaaatgaaattgtaaacttaaattagatgcatagtgaaatttgggagttccat |
30561816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 361 - 432
Target Start/End: Complemental strand, 54901680 - 54901609
Alignment:
| Q |
361 |
ttgttcttaacttccacagagaatgaaattgtaaacttaaattagatgcatagtgaaatttgggagttccat |
432 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54901680 |
ttgttcttaacttccacagaaaatgaaattgtaaacttaaattagatgcatagtgaaatttgggagttccat |
54901609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 118 - 299
Target Start/End: Complemental strand, 540266 - 540085
Alignment:
| Q |
118 |
gagcaaaaaattctgcaaaatctaaatgtcctcaattccactttgttggggttgcaagttaagaggagatgacgagagggagagtggtggggttcacata |
217 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
540266 |
gagcaaaaaattctgcaaaatctatctgtcttcaattccactttgttggggttgcaagttaagaggagatgatgagggggagagtggtggggttcacata |
540167 |
T |
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| Q |
218 |
tgttaagcataagatgagtatgggtttctatgggttggattatgtgatgagagaagttgtaacttaatgtgtgagttgttat |
299 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
540166 |
tgttaagcataagatgaatatgggtttctacgggttggattatgtgatgagagaagttgtaacttaatgtgtgagttgttat |
540085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 361 - 432
Target Start/End: Complemental strand, 540022 - 539951
Alignment:
| Q |
361 |
ttgttcttaacttccacagagaatgaaattgtaaacttaaattagatgcatagtgaaatttgggagttccat |
432 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
540022 |
ttgttcttaacttccacaaagaatgaaattgtaaacttaaattagaggcatagtgaaatttgggagttccat |
539951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 149 - 299
Target Start/End: Complemental strand, 28823938 - 28823788
Alignment:
| Q |
149 |
tcaattccactttgttggggttgcaagttaagaggagatgacgagagggagagtggtggggttcacatatgttaagcataagatgagtatgggtttctat |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28823938 |
tcaattccactttgttggggttgcaagttaagaggagatgacgagggggagagtggtggggttcacatatcttaagcataagatgagtatgggtttctat |
28823839 |
T |
|
| Q |
249 |
gggttggattatgtgatgagagaagttgtaacttaatgtgtgagttgttat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28823838 |
gggttggattatgtgatgagagaagttgtaacttaatgtgtgagttgttat |
28823788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 361 - 432
Target Start/End: Complemental strand, 28823725 - 28823654
Alignment:
| Q |
361 |
ttgttcttaacttccacagagaatgaaattgtaaacttaaattagatgcatagtgaaatttgggagttccat |
432 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28823725 |
ttgttcttaacttccacagaaaatgaaattgtaaacttaaattagatgcatagtgaaatttgggagttccat |
28823654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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