View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_low_17 (Length: 413)
Name: NF13789_low_17
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 5129495 - 5129235
Alignment:
| Q |
1 |
tccttgaaaagggtttctgaatcctgagtctgaaatataaccacttatttgaggagctttgatcaaattgattgattagatttaaacaatttcaattttt |
100 |
Q |
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| T |
5129495 |
tccttgaaaagcgtttttgaatcctgagtctgaaatataaccacttatttgaggagctttgatcaaattgattgattagatttaaacaatttcaattttt |
5129396 |
T |
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| Q |
101 |
tgcatgatgttgcttgagatgtcagatgatattataagcatcgtgtaacaacatacaaaataaagaatttaaggaaagcatgcttgaaaacacgaacact |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5129395 |
tgcatgatgttgcttgagatgtaagatgatattataagcatcgtgtcacaacatacaaaataaagaatttaaggaaagcatgcttgaaaacacaaacact |
5129296 |
T |
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| Q |
201 |
acatttatgaattactgtcttatcatttgtcagtnnnnnnngttggttgcaattatagtaa |
261 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5129295 |
acatttatgaattactgtcttatcatttgtcagtaaaaaaagttggttgcaattatagtaa |
5129235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 253 - 394
Target Start/End: Complemental strand, 5128535 - 5128391
Alignment:
| Q |
253 |
ttatagtaaaatacatgtataagttatagtagtggnnnnnnn---actcaattaattagagtagttgaaagtagattgtggaattcaaattttgtttttg |
349 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5128535 |
ttatagtaaaatacatgtataagttatagtagtggttttttttttactcaattaattagagtagttgaaagtagattgtggaattcaaattttgtttttg |
5128436 |
T |
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| Q |
350 |
tcttaaacttctggtttccaacggggtaatttgaagttcggttag |
394 |
Q |
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| T |
5128435 |
tcttaaacttctggtttccaacggggtaatttgaagttcggttag |
5128391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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