View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_low_18 (Length: 406)
Name: NF13789_low_18
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_low_18 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 138 - 390
Target Start/End: Complemental strand, 32618241 - 32617991
Alignment:
| Q |
138 |
ctatgaattttgtttatggcaagggagtttaatttgtttgtgaatgaagatgcctcaaaattttgatgttagtt-agttttataatacaatatcgtacgc |
236 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| | |
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| T |
32618241 |
ctatgagttttgtttatggcaggggagtttaatttgtttgtgaatgaagatgcctcaaaattttgatgttagtttagttttataatataatatcgtacac |
32618142 |
T |
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| Q |
237 |
ttcttttttcccttttgttttgattaaaagttctcttttccttccttctaagatcgtatactctaacacccttatatccaaccagatatgcatcttcaaa |
336 |
Q |
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| T |
32618141 |
tt---ttttcgcttttgttttgattaaaagttctcttttccttccttctaagatcgtatactctaacaccctcatatccaaccagatatgaatcttcaaa |
32618045 |
T |
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| Q |
337 |
gttaatttgcattctcttttgaattttaagatgattatatttagatcacaaata |
390 |
Q |
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| T |
32618044 |
gttaatttgcattctcttttgaattttaagatgattatatttagatcacaaata |
32617991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 138 - 387
Target Start/End: Original strand, 14604684 - 14604920
Alignment:
| Q |
138 |
ctatgaattttgtttatggcaagggagtttaatttgtttgtgaatgaagatgcctcaaaattttgatgttagttagttttataatacaatatcgtacgct |
237 |
Q |
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| T |
14604684 |
ctatgaattttgtttatggtatgggagtttaatttgtttgtgaatgaagatgcctta----------gtt---tagttttataatataatatcgtacact |
14604770 |
T |
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| Q |
238 |
tcttttttcccttttgttttgattaaaagttctcttttccttccttctaagatcgtatactctaacacccttatatccaaccagatatgcatcttcaaag |
337 |
Q |
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| T |
14604771 |
tcttttttcccttttgttttgattaaaatttctcttttcattccttctaagatcgtatactctaacaccctcatatccaaccagatatgcatcttcaaag |
14604870 |
T |
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| Q |
338 |
ttaatttgcattctcttttgaattttaagatgattatatttagatcacaa |
387 |
Q |
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| T |
14604871 |
ttaatttgcattctcttttgaattttaagatgattatatttagatcacaa |
14604920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 14604557 - 14604616
Alignment:
| Q |
12 |
ttctatctttttggttatgaactttcttacttacgatcattgttaatctctctatagctt |
71 |
Q |
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| T |
14604557 |
ttctatctttttggttatgaaccttcttacttacaatcgttgttaatctctctatagctt |
14604616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 32618365 - 32618305
Alignment:
| Q |
12 |
ttctatctttttggttatgaactttcttacttacgatcattgttaatctctctatagcttc |
72 |
Q |
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| T |
32618365 |
ttctatcttttttgttatgaaccttcttacttacaatcgttgttaatctctctatagcttc |
32618305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 138 - 306
Target Start/End: Complemental strand, 51271030 - 51270864
Alignment:
| Q |
138 |
ctatgaattttgtttatggcaagggagtttaatttgtttgtgaatgaagatgcctcaaaattttgatgttag-ttagttttataatacaatatcgtacgc |
236 |
Q |
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| T |
51271030 |
ctatgatttttgtttgtggcaggggagtttaatttgtttatgaatgaagatgcctcaaaattttgatgttagtttagttttat-----aacatcgtacac |
51270936 |
T |
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| Q |
237 |
ttcttttttcccttttgttttgattaaaagttctcttttccttccttc--taagatcgtatactctaacacc |
306 |
Q |
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| T |
51270935 |
ttattttttcccttttgttttgattcaaagttctcttttccttccttctataagatcgtatactctaacacc |
51270864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 22774523 - 22774461
Alignment:
| Q |
138 |
ctatgaattttgtttatggcaagggagtttaatttgtttgtgaatgaagatgcctcaaaattt |
200 |
Q |
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| T |
22774523 |
ctatgatttttgtttgtggcaggggagtttaatttgtttatgaatgaagatgcctcaaaattt |
22774461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 36137 - 36189
Alignment:
| Q |
138 |
ctatgaattttgtttatggcaagggagtttaatttgtttgtgaatgaagatgc |
190 |
Q |
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|||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| |
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| T |
36137 |
ctatgatttttgtttgtggcaggggagtttaatttgtttatgaatgaagatgc |
36189 |
T |
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