View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_low_19 (Length: 406)
Name: NF13789_low_19
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 33090764 - 33090395
Alignment:
| Q |
18 |
atgaaacaagacattagcataggccacaatagtgttgggaaaagcatctatcatgaaatatgataatagaaaatttggaaaacataaaactttagcttaa |
117 |
Q |
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| T |
33090764 |
atgaaacaagacattagcataggccacaatagtgttgggaaaagcatctatcatgaaatatgataatagaaaatttggaaaacataaaactctagcttaa |
33090665 |
T |
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| Q |
118 |
tgaagaaaggtaggtgatatatcaaatatgttggcacatgagacagacactttgttctaacataacatcctcaaaattaatcttgattaagaagtaatac |
217 |
Q |
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| T |
33090664 |
tgaagaaaggtaggtgatatatcaaatatgttggcacatgagacagacactttgttctaacataacatcctcaaaattaatcttgattaagaagtaatac |
33090565 |
T |
|
| Q |
218 |
acagatagaaaatttaaacaagaatgaataattaggatattatcagttaatgagaccacatcagtataatgagaattgtggagtccataaggggtctgat |
317 |
Q |
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| T |
33090564 |
aaagatagaaaatttaaacaagaatgaataattaggatattatcagttaatgagaccacatcagtataatgagaattgtggagtccataaggggtctgat |
33090465 |
T |
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| Q |
318 |
atatgcaatcctaccaaccnnnnnnncagagcttccagagttatttaccaatttgatccctactccctact |
388 |
Q |
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| T |
33090464 |
atatgcaatcctaccaacc-aaaaaacagagcttccagagttatttaccaatttgattcctactccctact |
33090395 |
T |
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