View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13789_low_2 (Length: 673)

Name: NF13789_low_2
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13789_low_2
NF13789_low_2
[»] chr5 (3 HSPs)
chr5 (15-656)||(6255463-6256110)
chr5 (430-505)||(43177258-43177333)
chr5 (431-493)||(21240368-21240430)
[»] chr7 (7 HSPs)
chr7 (332-508)||(4154511-4154688)
chr7 (401-508)||(21562555-21562663)
chr7 (333-473)||(34868122-34868259)
chr7 (451-553)||(779317-779419)
chr7 (400-505)||(3100767-3100873)
chr7 (456-507)||(779260-779311)
chr7 (453-490)||(34866555-34866592)
[»] chr8 (4 HSPs)
chr8 (400-506)||(15699510-15699617)
chr8 (400-505)||(36586923-36587027)
chr8 (277-446)||(28235852-28236022)
chr8 (494-558)||(15699543-15699607)
[»] chr3 (4 HSPs)
chr3 (378-509)||(28426070-28426202)
chr3 (430-484)||(809092-809146)
chr3 (358-444)||(940415-940501)
chr3 (456-553)||(11513453-11513550)
[»] scaffold0050 (1 HSPs)
scaffold0050 (387-493)||(74423-74531)
[»] chr1 (3 HSPs)
chr1 (408-507)||(23353104-23353204)
chr1 (456-505)||(40608659-40608707)
chr1 (430-489)||(18620757-18620817)
[»] chr2 (2 HSPs)
chr2 (453-505)||(32316073-32316125)
chr2 (400-492)||(21775407-21775500)
[»] chr4 (1 HSPs)
chr4 (431-489)||(10235683-10235742)
[»] chr6 (1 HSPs)
chr6 (400-492)||(33114118-33114211)
[»] scaffold0010 (1 HSPs)
scaffold0010 (456-500)||(124024-124068)


Alignment Details
Target: chr5 (Bit Score: 541; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 15 - 656
Target Start/End: Complemental strand, 6256110 - 6255463
Alignment:
Q  15 atgaatagagataagagtgtccattgtcaagtggtcccaactttatgtataatagtccaaaatgagagggtagtttagtttctacgtgaataagattaga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6256110 atgaatagagataagagtgtccattgtcaagtggtcccaactttatgtataatagtccaaaatgagagggtagtttagtttctacgtgaataagattaga 6256011  T
Q  115 tcctattcctatcgtatccctacatttggaacacatttcgaggtggattggaaactattctctcccaaatgattgtttgagatgaggaattagtcttcta 214  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6256010 tcctattcctatcgtatcactacatttggaacacatttcgaggtggattggaaactattctctcccaaatgattgtttgagatgaggaattagtcttcta 6255911  T
Q  215 tggttatgtagttgcagcgagtacaatattaaaaattaaggtttagtcggttgaagttatgtcttgtattttcgtgacttatgcttcaagcaatttgggc 314  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| |||||||||||||||    
T  6255910 tggttatgtagttgcaccgagtacaatattaaaaattaaggtttagtcagttgaagttatgtcttgtatttttgtgatttatgcctcaagcaatttgggc 6255811  T
Q  315 aataagtcatatttgagcgttctaaatgtttttagaagtcctttgaggcggcgtccttaagagggcgcatctaaggccgttttgtcccttctagagggcg 414  Q
     |||||||| ||||||||||||||||||||| |||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| ||||| |    
T  6255810 cataagtcagatttgagcgttctaaatgtttctagaagtcctttgaagtggcgttcttaagagggcgcatctaaggccgttttgtcccttctggagggtg 6255711  T
Q  415 ttgtgcccttgattgtatattggcggtccacagcctcgaaacacgagtcttgggacaagacgaaatgattaattatgaaattgatggtccacaaccttcc 514  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||    
T  6255710 ttgtgcccttgattgtatattggcggtccacaacctcgaaacacgagtcttggcacaagacgaagtgattaattatgaaattgatgatccacaaccttcc 6255611  T
Q  515 aagcaccagtattaggacaagacaaaatgattaattatggaatttatgacacagattacaagaccatatgtatagtgtttaagtccatatatatacttag 614  Q
    ||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6255610 aagtaccggtattaggacaagacaaaatgattaattatgaaatttatgacacagattacaagaccatatgtatagtgtttaagtccatatatatacttag 6255511  T
Q  615 ------ctttgaactatattcaattattgtatttgtcattgaacattg 656  Q
          ||||||||||||||||||||||||||||||||||||||||||    
T  6255510 ctttagctttgaactatattcaattattgtatttgtcattgaacattg 6255463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 430 - 505
Target Start/End: Original strand, 43177258 - 43177333
Alignment:
Q  430 tatattggcggtccacagcctcgaaacacgagtcttgggacaagacgaaatgattaattatgaaattgatggtcca 505  Q
    ||||||| |||||||||||| | || |||||||||||||||||| |||| |||||||||||  |||||||||||||    
T  43177258 tatattgacggtccacagcccccaagcacgagtcttgggacaaggcgaagtgattaattatagaattgatggtcca 43177333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 431 - 493
Target Start/End: Complemental strand, 21240430 - 21240368
Alignment:
Q  431 atattggcggtccacagcctcgaaacacgagtcttgggacaagacgaaatgattaattatgaa 493  Q
    |||||| |||||||||||| | ||||||||||||||| |||||||| | ||||||||||||||    
T  21240430 atattgacggtccacagcccccaaacacgagtcttggaacaagacggagtgattaattatgaa 21240368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 332 - 508
Target Start/End: Original strand, 4154511 - 4154688
Alignment:
Q  332 cgttctaaatgtttttagaagtcctttgaggcggcgtccttaagagggcgcatctaaggccgttttgtcccttctagagggcgttgtgcccttgattgta 431  Q
    ||||||| |||||| |||||| | ||||||| |||| |||||| ||| |||  |||||||||||||| ||||| | ||| |||||||||| || ||| ||    
T  4154511 cgttctagatgtttctagaagccttttgaggtggcgcccttaacaggacgcgcctaaggccgttttggcccttttggagagcgttgtgcctttaattata 4154610  T
Q  432 tattggcggtccacag-cctcgaaacacgagtcttgggacaagacgaaatgattaattatgaaattgatggtccacaa 508  Q
    |||||    ||||||| || | || |||||||||||||||||||||| ||||||||||||||| | ||| ||||||||    
T  4154611 tattgattatccacagtcccccaagcacgagtcttgggacaagacgacatgattaattatgaagtcgatagtccacaa 4154688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 401 - 508
Target Start/End: Complemental strand, 21562663 - 21562555
Alignment:
Q  401 ccttctagagggcgttgtgcccttgattgtatattggcggtccacagcct-cgaaacacgagtcttgggacaagacgaaatgattaattatgaaattgat 499  Q
    |||||| || || ||||||||||| ||| ||||||||| ||||||||||| | || |||||||||||||||||| |||  |||||| ||||||| |||||    
T  21562663 ccttctggatggtgttgtgcccttaattatatattggcagtccacagcctcccaatcacgagtcttgggacaaggcgatgtgattatttatgaagttgat 21562564  T
Q  500 ggtccacaa 508  Q
     ||| ||||    
T  21562563 agtctacaa 21562555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 333 - 473
Target Start/End: Original strand, 34868122 - 34868259
Alignment:
Q  333 gttctaaatgtttttagaagtcctttgaggcggcgtccttaagagggcgcatctaaggccgttttgtcccttctagagggcgttgtgcccttgattgtat 432  Q
    |||||| |||||| |||||| | |||||||||||| |||||||||| |||| ||||| |||||||| |||||   ||||| ||||||    | ||| |||    
T  34868122 gttctagatgtttctagaagccttttgaggcggcgcccttaagaggacgcacctaagtccgttttggcccttacggagggtgttgtg----taattatat 34868217  T
Q  433 attggcggtccac-agcctcgaaacacgagtcttgggacaag 473  Q
    |||| |||||||| | || | |||||||||||||||||||||    
T  34868218 attgacggtccacaaccccccaaacacgagtcttgggacaag 34868259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 451 - 553
Target Start/End: Original strand, 779317 - 779419
Alignment:
Q  451 cgaaacacgagtcttgggacaagacgaaatgattaattatgaaattgatggtccacaaccttccaagcaccagtattaggacaagacaaaatgattaatt 550  Q
    |||| |||||||||||| ||||  |||| |||||||||||||| | ||| ||||||||||  |||||||| ||| || | ||||| |||| |||||||||    
T  779317 cgaagcacgagtcttggaacaaagcgaagtgattaattatgaagtcgatagtccacaaccccccaagcacgagtcttggaacaaggcaaagtgattaatt 779416  T
Q  551 atg 553  Q
    |||    
T  779417 atg 779419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 505
Target Start/End: Original strand, 3100767 - 3100873
Alignment:
Q  400 cccttctagagggcgttgtgcccttgattgtatattggcggtccacagcctcgaaa-cacgagtcttgggacaagacgaaatgattaattatgaaattga 498  Q
    ||||||| ||||||||||||||||| |||  | ||||  ||||||||||  |  || |||||||||||||||||| | || ||||| |||||||| ||||    
T  3100767 cccttctggagggcgttgtgcccttaattacacattgatggtccacagctccacaagcacgagtcttgggacaaggcaaagtgatttattatgaagttga 3100866  T
Q  499 tggtcca 505  Q
    |||||||    
T  3100867 tggtcca 3100873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 507
Target Start/End: Original strand, 779260 - 779311
Alignment:
Q  456 cacgagtcttgggacaagacgaaatgattaattatgaaattgatggtccaca 507  Q
    |||||||||||||||||| |||| |||||||||||||| | ||| |||||||    
T  779260 cacgagtcttgggacaaggcgaagtgattaattatgaagtcgatagtccaca 779311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 490
Target Start/End: Original strand, 34866555 - 34866592
Alignment:
Q  453 aaacacgagtcttgggacaagacgaaatgattaattat 490  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  34866555 aaacacgagtattgggacaagacgaagtgattaattat 34866592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 400 - 506
Target Start/End: Original strand, 15699510 - 15699617
Alignment:
Q  400 cccttctagagggcgttgtgcccttgattgtatattggcggtccacagcctcgaaa-cacgagtcttgggacaagacgaaatgattaattatgaaattga 498  Q
    ||||||| |||||| |||||||||| ||| ||||||| ||||||||| ||||  || |||||||||||||||||| |||| |||||||||||||||||||    
T  15699510 cccttctggagggcattgtgcccttaattatatattgacggtccacaacctcccaagcacgagtcttgggacaaggcgaagtgattaattatgaaattga 15699609  T
Q  499 tggtccac 506  Q
    ||| ||||    
T  15699610 tggcccac 15699617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 400 - 505
Target Start/End: Complemental strand, 36587027 - 36586923
Alignment:
Q  400 cccttctagagggcgttgtgcccttgattgtatattggcggtccacagcctcgaaacacgagtcttgggacaagacgaaatgattaattatgaaattgat 499  Q
    |||||||||||||| || |  |||| ||| ||||||| ||||||||| || | |||||||||| ||||||| |  |||||||||||||||||||||||||    
T  36587027 cccttctagagggcattatatccttcattatatattgacggtccacaacccc-aaacacgagttttgggaccaagcgaaatgattaattatgaaattgat 36586929  T
Q  500 ggtcca 505  Q
    ||||||    
T  36586928 ggtcca 36586923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 277 - 446
Target Start/End: Complemental strand, 28236022 - 28235852
Alignment:
Q  277 cttgtattttcgtgacttatgcttcaagcaatttgggcaataagtcatatttg-agcgttctaaatgtttttagaagtcctttgaggcggcgtccttaag 375  Q
    ||||||||| |||||||||  |  ||||||| |||| |  ||||||| ||||  ||||||||| ||||||||| ||| | ||||||||||||  | ||||    
T  28236022 cttgtatttccgtgacttagaccccaagcaacttggactctaagtcagatttatagcgttctagatgtttttaaaagccttttgaggcggcgatcataag 28235923  T
Q  376 agggcgcatctaaggccgttttgtcccttctagagggcgttgtgcccttgattgtatattggcggtccaca 446  Q
    ||  ||   ||||||| |||||| ||||||| ||| | ||||||||||| ||| ||||||| |||||||||    
T  28235922 agaacgtgcctaaggctgttttgacccttctggagagtgttgtgcccttaattatatattgacggtccaca 28235852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 558
Target Start/End: Original strand, 15699543 - 15699607
Alignment:
Q  494 attgatggtccacaaccttccaagcaccagtattaggacaagacaaaatgattaattatggaatt 558  Q
    ||||| |||||||||||| |||||||| ||| || ||||||| | || |||||||||||| ||||    
T  15699543 attgacggtccacaacctcccaagcacgagtcttgggacaaggcgaagtgattaattatgaaatt 15699607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 378 - 509
Target Start/End: Complemental strand, 28426202 - 28426070
Alignment:
Q  378 ggcgcatctaaggccgtttt-gtcccttctagagggcgttgtgcccttgattgtatattggcggtccacagcctcgaaacacgagtcttgggacaagacg 476  Q
    |||||| ||||||| ||||| | ||||||| ||||||||||| ||||| ||| ||||||| |||||||||||| | || ||| |||||||||||||| |     
T  28426202 ggcgcacctaaggctgtttttggcccttctggagggcgttgtacccttaattatatattgacggtccacagcccccaagcacaagtcttgggacaaggca 28426103  T
Q  477 aaatgattaattatgaaattgatggtccacaac 509  Q
    |||||||||||||| || | ||| |||||||||    
T  28426102 aaatgattaattataaattcgatagtccacaac 28426070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 484
Target Start/End: Complemental strand, 809146 - 809092
Alignment:
Q  430 tatattggcggtccacagcctcgaaacacgagtcttgggacaagacgaaatgatt 484  Q
    |||| ||||||||||||||| | ||||| ||||||||||||||| ||||||||||    
T  809146 tataatggcggtccacagcccccaaacatgagtcttgggacaaggcgaaatgatt 809092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 444
Target Start/End: Complemental strand, 940501 - 940415
Alignment:
Q  358 tgaggcggcgtccttaagagggcgcatctaaggccgttttgtcccttctagagggcgttgtgcccttgattgtatattggcggtcca 444  Q
    |||||||||| ||||  |||| ||| |||| ||| |||| | ||||||||||||||| ||||||||| ||| ||||||| |||||||    
T  940501 tgaggcggcgcccttcggaggacgcgtctagggctgtttgggcccttctagagggcggtgtgcccttaattatatattgacggtcca 940415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 553
Target Start/End: Complemental strand, 11513550 - 11513453
Alignment:
Q  456 cacgagtcttgggacaagacgaaatgattaattatgaaattgatggtccacaaccttccaagcaccagtattaggacaagacaaaatgattaattatg 553  Q
    |||||||||||||||||| |||| | ||||||| ||||  |||| ||||||| ||  |||||||| ||| || |||||||   || ||||||||||||    
T  11513550 cacgagtcttgggacaaggcgaagttattaattgtgaaggtgatagtccacagccccccaagcacgagtcttgggacaaggtgaagtgattaattatg 11513453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 387 - 493
Target Start/End: Original strand, 74423 - 74531
Alignment:
Q  387 aaggccgttttgtcccttctagagggcgtt-gtgcccttgattgtatattggcggtccacagc-ctcgaaacacgagtcttgggacaagacgaaatgatt 484  Q
    |||||||||| | ||||||| |||||| || |||||||| |||  |||||| ||||||||||| | | |||| |||||||| ||||||| |||| |||||    
T  74423 aaggccgtttggacccttctggagggcatttgtgcccttaattacatattgacggtccacagcaccccaaactcgagtcttaggacaaggcgaagtgatt 74522  T
Q  485 aattatgaa 493  Q
    |||||||||    
T  74523 aattatgaa 74531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 507
Target Start/End: Complemental strand, 23353204 - 23353104
Alignment:
Q  408 gagggcgttgtgcccttgattgtatattggcggtccacagcctcgaaa-cacgagtcttgggacaagacgaaatgattaattatgaaattgatggtccac 506  Q
    |||| |||||||||||| ||| ||||||| || |||||| || |  || ||| |||||||||||||| |||| |||||||||||||| | ||||||||||    
T  23353204 gaggacgttgtgcccttaattatatattgacgctccacaaccccccaagcacaagtcttgggacaaggcgaagtgattaattatgaattcgatggtccac 23353105  T
Q  507 a 507  Q
    |    
T  23353104 a 23353104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 505
Target Start/End: Complemental strand, 40608707 - 40608659
Alignment:
Q  456 cacgagtcttgggacaagacgaaatgattaattatgaaattgatggtcca 505  Q
    ||||||||| |||||||  |||| ||||||||||||||||||||||||||    
T  40608707 cacgagtct-gggacaaagcgaagtgattaattatgaaattgatggtcca 40608659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 430 - 489
Target Start/End: Original strand, 18620757 - 18620817
Alignment:
Q  430 tatattggcggtccacagcctcgaaa-cacgagtcttgggacaagacgaaatgattaatta 489  Q
    ||||||| ||||||||||||||  || |||||||||||||||| | |||| ||||||||||    
T  18620757 tatattgacggtccacagcctcccaagcacgagtcttgggacatggcgaagtgattaatta 18620817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 453 - 505
Target Start/End: Original strand, 32316073 - 32316125
Alignment:
Q  453 aaacacgagtcttgggacaagacgaaatgattaattatgaaattgatggtcca 505  Q
    ||||||||||||||||||||| |||| ||||||||||| | || |||||||||    
T  32316073 aaacacgagtcttgggacaaggcgaagtgattaattataatatggatggtcca 32316125  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 492
Target Start/End: Original strand, 21775407 - 21775500
Alignment:
Q  400 cccttctagagggc-gttgtgcccttgattgtatattggcggtccacagcctcgaaacacgagtcttgggacaagacgaaatgattaattatga 492  Q
    |||||||||||||  |||||| |||| |||  |||||| ||||||||| |  | ||||||||||||| |||| || |||||| |||||||||||    
T  21775407 cccttctagaggggtgttgtgtccttaattagatattgacggtccacaactcccaaacacgagtctttggacgaggcgaaataattaattatga 21775500  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 489
Target Start/End: Complemental strand, 10235742 - 10235683
Alignment:
Q  431 atattggcggtccacagcctcgaaa-cacgagtcttgggacaagacgaaatgattaatta 489  Q
    |||||| ||||||| ||||||  || |||||||||||||||||| |||||||||||||||    
T  10235742 atattgacggtccaaagcctcctaagcacgagtcttgggacaaggcgaaatgattaatta 10235683  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 492
Target Start/End: Complemental strand, 33114211 - 33114118
Alignment:
Q  400 cccttctagagggcgttgtgcccttgattgtatattggcggtccacag-cctcgaaacacgagtcttgggacaagacgaaatgattaattatga 492  Q
    |||||||||||||||||||| |||| |||  |||| | |||||||||| || | ||||||||| |||||||| || | || ||||| |||||||    
T  33114211 cccttctagagggcgttgtgtccttaattagatatcgacggtccacagtcccccaaacacgagccttgggacgaggcaaagtgattgattatga 33114118  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 500
Target Start/End: Original strand, 124024 - 124068
Alignment:
Q  456 cacgagtcttgggacaagacgaaatgattaattatgaaattgatg 500  Q
    |||||||||||||| ||| |||| |||||||||||||| ||||||    
T  124024 cacgagtcttgggataaggcgaagtgattaattatgaagttgatg 124068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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