View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_low_20 (Length: 384)
Name: NF13789_low_20
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 12775527 - 12775173
Alignment:
| Q |
14 |
ataattctcatacgatttcagttacaaaccttccgcataaagacgtttaacaaatataccccagcaacctcttttgattatcccattcatcttcacattc |
113 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12775527 |
ataattctcatacgatttcagttataaaccttctgcataaagacgtttaacaaatataccccagcaacctcttttgattatcccattcatcttcacattc |
12775428 |
T |
|
| Q |
114 |
tctacccgtgaccggcaattaaaattagtttccagatccatcaattagatcgtatcatttcttcccagtcaaattcgtgtaagttattaagacttcatgt |
213 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12775427 |
tctacccatgaccggcaattaaaattagtttccagatccatcaattagatcgtatcatttcttcccaatcaaattcgtgtaagttattaagacttcatgt |
12775328 |
T |
|
| Q |
214 |
ccttccatttcattcatattcttattttatgaaagtacaatttcattccatttttgttttcctgaacctgcctctatacgtaggattaagagtaggcctc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12775327 |
ccttccatttcattcatattcttattttatgaaagtacaatttcattccatttttgttttcctgaacctgcctctatacgtaggattaagagtaggcctc |
12775228 |
T |
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| Q |
314 |
cgttcgccgtcaaattgtgttgatttttgggagttggatcgagtcacatgattct |
368 |
Q |
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| T |
12775227 |
cattcgccgtcaaattgtgttgatttttgggagttggatcgcgtcacatgattct |
12775173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 16974779 - 16975132
Alignment:
| Q |
14 |
ataattctcatacgatttcagttacaaaccttccgcataaagacgtttaacaaatataccccagcaacctcttttgattatcccattcatcttcacattc |
113 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16974779 |
ataattctcatacgatttcagttacaaaccttctgcatgaagacatttaacaaatataccccatcaacctcttttgattatcccattcatcttcacattc |
16974878 |
T |
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| Q |
114 |
tctacccgtgaccggcaattaaaattagtttccagatccatcaattagatcgtatcatttcttcccagtcaaattcgtgtaagttattaagacttcatgt |
213 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16974879 |
tctacccgtgaccggcaat-aaaattagtttccaggtccatcaattagatcgtatcatttcttccaagtcaaattcgtgtaagttattaagacttcatgt |
16974977 |
T |
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| Q |
214 |
ccttccatttcattcatattcttattttatgaaagtacaatttcattccatttttgttttcctgaacctgcctctatacgtaggattaagagtaggcctc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16974978 |
ccttccatttcattcatattcttattttatgaaagtacaatttcattccgtttttgttttcctgaacctgcctctatacgtaggattaagagtaggcctc |
16975077 |
T |
|
| Q |
314 |
cgttcgccgtcaaattgtgttgatttttgggagttggatcgagtcacatgattct |
368 |
Q |
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|||||||| || ||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
16975078 |
cgttcgccatcgaattgtgttgatttttgagagttggatcacgtcacatgattct |
16975132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 242 - 368
Target Start/End: Complemental strand, 28969674 - 28969548
Alignment:
| Q |
242 |
atgaaagtacaatttcattccatttttgttttcctgaacctgcctctatacgtaggattaagagtaggcctccgttcgccgtcaaattgtgttgattttt |
341 |
Q |
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||||||||||||||| ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |||| |
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| T |
28969674 |
atgaaagtacaattttatttcgtttttgttttcatgaacctgcctctatacgtaggattaagagtaggcctccgttcgacgtcgaatattgttgaatttt |
28969575 |
T |
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| Q |
342 |
gggagttggatcgagtcacatgattct |
368 |
Q |
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|||||||||||| ||||||||||||| |
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| T |
28969574 |
gggagttggatcacgtcacatgattct |
28969548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 296
Target Start/End: Original strand, 35838769 - 35838914
Alignment:
| Q |
150 |
tccatcaattagatcgtatcatttcttcccagtcaaattcgtgtaagttattaagacttcatgtccttccatttcattcatattcttattttatgaaagt |
249 |
Q |
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|||||||||||| || ||||||| |||| ||| || ||||||||||| ||||||||| | | |||| ||||||||||| ||| ||| || ||||| |
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| T |
35838769 |
tccatcaattagttcctatcattccttctttgtccaactcgtgtaagttgttaagactttctattcttctatttcattcattgtctcattccataaaagt |
35838868 |
T |
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| Q |
250 |
acaatttcattccatttttgttttcctgaacctgcctctatacgtag |
296 |
Q |
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||||||| |||||| |||||| ||||| ||| ||||||||||||||| |
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| T |
35838869 |
acaattttattcca-ttttgtcttcctaaacttgcctctatacgtag |
35838914 |
T |
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