View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13789_low_21 (Length: 383)
Name: NF13789_low_21
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 5129731 - 5129472
Alignment:
| Q |
14 |
atgaagcaacttccatacaataggtagggttatgaaagttcttgttttaggatgcaaatgatgtcttttctttttattgtaaaatttaatctctgttcat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
5129731 |
atgaagcaacttccatacaataggtagggttatgaaagttcttgttttaggatgaaaatgatgtcttttcttttt-ttgtaaactttaatctctgttcat |
5129633 |
T |
|
| Q |
114 |
tagtcattatctatggttttcggagaatgacttgctaccttgttaccttcattaggaaaaacaagacagttctttatcattcagtttcctgatgtcttat |
213 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| || | | || | |||| |||||||||||||||||||||||||||| |
|
|
| T |
5129632 |
tagtcattatctatggttttcagagaatgacttgctaccttgttgcc--gagtgcttaatgc---tcagt--tttatcattcagtttcctgatgtcttat |
5129540 |
T |
|
| Q |
214 |
atatgcttttcttcatctatcttgtcttcttagtctttatctgctccttgaaaagggtttctgaatcc |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
5129539 |
atatgcttttcttcatctatcttgtcttcttagtctttatctgctccttgaaaagcgtttttgaatcc |
5129472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 258 - 343
Target Start/End: Original strand, 26325082 - 26325167
Alignment:
| Q |
258 |
tccttgaaaagggtttctgaatccctaaacctgaattataatgaattatctatttgagtagcttcaatgaatcgattagatttaaa |
343 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
26325082 |
tccttgaaaagggtttctgaatccctaagcctgaattataatgatttatctatttgagtagcttcgatgaattgattagatttaaa |
26325167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 244 - 364
Target Start/End: Complemental strand, 8527534 - 8527414
Alignment:
| Q |
244 |
tagtctttatctgctccttgaaaagggtttctgaatccctaaacctgaattataatgaattatctatttgagtagcttcaatgaatcgattagatttaaa |
343 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8527534 |
tagtcattaactgctccttgaaaagggtttctgaatccctaaacctgaattataatgaattatctatttgagtagcttcgatgaatcgattagatttaaa |
8527435 |
T |
|
| Q |
344 |
atttaatgattgaatttcaat |
364 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8527434 |
atttaatgattgaatttcaat |
8527414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 244 - 364
Target Start/End: Complemental strand, 8534125 - 8534005
Alignment:
| Q |
244 |
tagtctttatctgctccttgaaaagggtttctgaatccctaaacctgaattataatgaattatctatttgagtagcttcaatgaatcgattagatttaaa |
343 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
8534125 |
tagtcattaactgctccttgaaaagggtttctgaatccctaagcctgaattataatgaattatctatttgagtagctttgatgaattgattagatttaaa |
8534026 |
T |
|
| Q |
344 |
atttaatgattgaatttcaat |
364 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8534025 |
atttaatgattgaatttcaat |
8534005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 240 - 321
Target Start/End: Original strand, 1601534 - 1601615
Alignment:
| Q |
240 |
ttcttagtctttatctgctccttgaaaagggtttctgaatccctaaacctgaattataatgaattatctatttgagtagctt |
321 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| | | ||||||||||||||||| |||||| ||||| |
|
|
| T |
1601534 |
ttcttagtctttaactgctccttgaaaagggtttctgaatccctaagcgttaattataatgaattatcagtttgaggagctt |
1601615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 240 - 364
Target Start/End: Original strand, 8545546 - 8545671
Alignment:
| Q |
240 |
ttcttagtctttatctgctccttgaaaagggtttctgaatccctaaacctgaattataatgaattatctatttgagtagcttcaatgaatcgattagatt |
339 |
Q |
| |
|
||||| ||||||| ||||||||||||||| ||||||| |||||| | | | |||||||||||||||| ||||||| ||||| |||||| | ||||||| |
|
|
| T |
8545546 |
ttcttcgtctttaactgctccttgaaaagagtttctgcatccctgagcgttaattataatgaattattgatttgaggagctttgatgaatagtttagatt |
8545645 |
T |
|
| Q |
340 |
taaa-atttaatgattgaatttcaat |
364 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
8545646 |
taaatttttaatgattgaatttcaat |
8545671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 9001984 - 9001940
Alignment:
| Q |
241 |
tcttagtctttatctgctccttgaaaagggtttctgaatccctaa |
285 |
Q |
| |
|
|||||||||||| |||||| |||||||| |||| ||||||||||| |
|
|
| T |
9001984 |
tcttagtctttaactgctcgttgaaaagtgtttttgaatccctaa |
9001940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 244 - 360
Target Start/End: Complemental strand, 9441868 - 9441752
Alignment:
| Q |
244 |
tagtctttatctgctccttgaaaagggtttctgaatccctaaacctgaattataatgaattatctatttgagtagcttcaatgaatcgattagatttaaa |
343 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9441868 |
tagtcattaactgctccttgaaaagggtttctgaatccctaaacctgaattataatgaattatctatttgagtagcttcgatgaatcgattagatttaaa |
9441769 |
T |
|
| Q |
344 |
atttaatgattgaattt |
360 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9441768 |
atttaatgattgaattt |
9441752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 240 - 364
Target Start/End: Original strand, 48363166 - 48363291
Alignment:
| Q |
240 |
ttcttagtctttatctgctccttgaaaagggtttctgaatccctaaacctgaattataatgaattatctatttgagtagcttcaatgaatcgattagatt |
339 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||| | ||| ||||||| ||||| ||||||| ||||| |||||| | ||||||| |
|
|
| T |
48363166 |
ttcttaatctttaactgctccttgaaaagggtttctgaatccctaaacgttaatcataatgagttatcaatttgaggagctttgatgaatagtttagatt |
48363265 |
T |
|
| Q |
340 |
taaa-atttaatgattgaatttcaat |
364 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
48363266 |
taaatttttaatgattgaatttcaat |
48363291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University