View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13789_low_22 (Length: 375)

Name: NF13789_low_22
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13789_low_22
NF13789_low_22
[»] chr6 (6 HSPs)
chr6 (1-189)||(21612159-21612348)
chr6 (1-189)||(5659615-5659802)
chr6 (214-358)||(5659821-5659965)
chr6 (214-358)||(21612376-21612520)
chr6 (276-358)||(21612570-21612652)
chr6 (298-358)||(21283564-21283624)
[»] chr8 (7 HSPs)
chr8 (7-178)||(44633193-44633365)
chr8 (214-358)||(44633403-44633546)
chr8 (298-358)||(39270426-39270486)
chr8 (298-358)||(39567461-39567521)
chr8 (298-358)||(45377513-45377573)
chr8 (308-341)||(39269686-39269719)
chr8 (308-345)||(45378302-45378339)
[»] scaffold0031 (3 HSPs)
scaffold0031 (298-358)||(128999-129059)
scaffold0031 (308-341)||(123693-123726)
scaffold0031 (308-341)||(134564-134597)
[»] chr7 (4 HSPs)
chr7 (298-358)||(26025287-26025347)
chr7 (298-358)||(21710200-21710259)
chr7 (308-341)||(21709414-21709447)
chr7 (308-341)||(26025648-26025681)
[»] chr4 (11 HSPs)
chr4 (298-358)||(702033-702093)
chr4 (298-358)||(757092-757152)
chr4 (298-358)||(770332-770392)
chr4 (298-358)||(35055737-35055797)
chr4 (315-356)||(33074961-33075002)
chr4 (298-358)||(16038664-16038724)
chr4 (308-341)||(702411-702444)
chr4 (308-341)||(756758-756791)
chr4 (308-341)||(770710-770743)
chr4 (308-345)||(16039437-16039474)
chr4 (308-345)||(35060215-35060252)
[»] chr1 (3 HSPs)
chr1 (298-358)||(51598362-51598422)
chr1 (298-358)||(16963006-16963066)
chr1 (308-341)||(51599192-51599225)
[»] chr3 (2 HSPs)
chr3 (315-358)||(36982929-36982972)
chr3 (315-358)||(37008368-37008411)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 21612159 - 21612348
Alignment:
Q  1 acacgatttcagtacccaatcaaaagaggaacacatgaataagaactagaacacgaaaaacttgaagatgatttttgatttgcagtttcaacaa-gcaaa 99  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||| |||||    
T  21612159 acacgatttaagtacccaatcaaaagaggaacacatgaataagaactagaacatgaaaaacttgaagatgatttccgatttgcagtttcaacaacgcaaa 21612258  T
Q  100 tcaacgattttaagcatgatttctgattttcatttgttcaagaggaactgaaaacgaattttcatttgatggtgttatgagaagacctat 189  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21612259 tcaaagattttaagcatgatttccgattttcatttgttcaagaggaactgaaaacgaattttcatttgatggtgttatgagaagacctat 21612348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 5659615 - 5659802
Alignment:
Q  1 acacgatttcagtaccc-aatcaaaagaggaacacatgaataagaactagaacacgaaaaacttgaagatgatttttgatttgcagtttcaacaa----- 94  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||       ||| |||||||||         
T  5659615 acacgatttcagtaccccaatcaaaagaggaacacatgagtaagaactagaacacaaaaaacttgaagattattt-------gcaatttcaacaacgcat 5659707  T
Q  95 gcaaatcaacgattttaagcatgatttctgattttcatttgttcaagaggaactgaaaacgaattttcatttgatggtgttatgagaagacctat 189  Q
    |||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  5659708 gcaaatcaacgattttgagcatgatttccgattttcatttgtttaagaggaattgaaaacgaattttcgtttgatggtgttatgagaagacctat 5659802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 214 - 358
Target Start/End: Original strand, 5659821 - 5659965
Alignment:
Q  214 cttatggtgctatgagcgaagctcttgtcattggaatataaaaaatttagtcattccaaatcttaaagaaattcacaaattaaaatgataatgggtttag 313  Q
    ||||||||| |||| | |||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5659821 cttatggtgttatgggtgaagttgttgtcattggaataaaaaaaatttagtcattccaaatcttaaagaaattcacaaattaaaatgataatgagtttag 5659920  T
Q  314 atttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    ||| | ||||||||||||||||||||| | |||| ||||||||||    
T  5659921 attaggatttcatatgataaaggtaaagtattatatgatgagttt 5659965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 214 - 358
Target Start/End: Original strand, 21612376 - 21612520
Alignment:
Q  214 cttatggtgctatgagcgaagctcttgtcattggaatataaaaaatttagtcattccaaatcttaaagaaattcacaaattaaaatgataatgggtttag 313  Q
    ||||||||| |||| | |||||| |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| |    
T  21612376 cttatggtgttatgggtgaagctgttgtcattggaatgaaaaaaatttagtcattccaaatcttaaggaaattcacaaattaaagtgataatgagttttg 21612475  T
Q  314 atttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||    
T  21612476 atttggatttcatatgataaaggtaaaattttatttgataagttt 21612520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 276 - 358
Target Start/End: Original strand, 21612570 - 21612652
Alignment:
Q  276 ttaaagaaattcacaaattaaaatgataatgggtttagatttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    |||| |||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  21612570 ttaaggaaattcacaaattaaaatgataatgagttttgatttggatttcatatgataaaggtaaaattttatttgatgagttt 21612652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 21283624 - 21283564
Alignment:
Q  298 atgataatgggtttagatttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    |||||||  |||||||||||| ||||||||||||||| ||||| |||||||||||||||||    
T  21283624 atgataaatggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttt 21283564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 7 - 178
Target Start/End: Original strand, 44633193 - 44633365
Alignment:
Q  7 tttcagtacccaatcaaaagaggaacacatgaataagaactagaacacgaaaaacttgaagatgatttttgatttgcagtttcaacaa-gcaaatcaacg 105  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||    
T  44633193 tttcagcacccaatcaaaagaggaacacatgaataagaacaagaacacgaaaaacttgaagatgatttgcaatttgcagtttcaacaacgcaaatcaacg 44633292  T
Q  106 attttaagcatgatttctgattttcatttgttcaagaggaactgaaaacgaattttcatttgatggtgttatg 178  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44633293 attttgagcatgatttccgattttcatttgttcaagaggaactgaaaacgaattttcatttgatggtgttatg 44633365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 214 - 358
Target Start/End: Original strand, 44633403 - 44633546
Alignment:
Q  214 cttatggtgctatgagcgaagctcttgtcattggaatataaaaaatttagtcattccaaatcttaaagaaattcacaaattaaaatgataatgggtttag 313  Q
    ||||||||| |||| | |||||| ||||||||| |||| |||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  44633403 cttatggtgttatgggtgaagctgttgtcattgtaataaaaaaaaattagtcattccaaatcttaaagaaattcagaaat-aaaatgataatgggtttag 44633501  T
Q  314 atttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  44633502 atttggatttcatatgataaaggtaaaattttatttgatgagttt 44633546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 39270486 - 39270426
Alignment:
Q  298 atgataatgggtttagatttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    ||||||| ||||||||||||  ||||||||||||||| ||||| |||||||||||||||||    
T  39270486 atgataaagggtttagatttagatttcatatgataaatgtaaagttttatttgatgagttt 39270426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 39567461 - 39567521
Alignment:
Q  298 atgataatgggtttagatttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||    
T  39567461 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatctgatgagttt 39567521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 45377513 - 45377573
Alignment:
Q  298 atgataatgggtttagatttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    ||||||| ||||||||||||| |||||| |||||||| ||||| |||||||||||||||||    
T  45377513 atgataaagggtttagatttggatttcaaatgataaatgtaaagttttatttgatgagttt 45377573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Complemental strand, 39269719 - 39269686
Alignment:
Q  308 gtttagatttgtatttcatatgataaaggtaaaa 341  Q
    ||||||||||| ||||||||||||||||||||||    
T  39269719 gtttagatttggatttcatatgataaaggtaaaa 39269686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 45378302 - 45378339
Alignment:
Q  308 gtttagatttgtatttcatatgataaaggtaaaatttt 345  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  45378302 gtttagatttggatttcatatgataaaggtaaagtttt 45378339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 129059 - 128999
Alignment:
Q  298 atgataatgggtttagatttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||| |||||||||||||||||    
T  129059 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttt 128999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Complemental strand, 123726 - 123693
Alignment:
Q  308 gtttagatttgtatttcatatgataaaggtaaaa 341  Q
    ||||||||||| ||||||||||||||||||||||    
T  123726 gtttagatttggatttcatatgataaaggtaaaa 123693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Complemental strand, 134597 - 134564
Alignment:
Q  308 gtttagatttgtatttcatatgataaaggtaaaa 341  Q
    ||||||||||| ||||||||||||||||||||||    
T  134597 gtttagatttggatttcatatgataaaggtaaaa 134564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 26025287 - 26025347
Alignment:
Q  298 atgataatgggtttagatttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||| |||||||||||||||||    
T  26025287 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttt 26025347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 21710259 - 21710200
Alignment:
Q  298 atgataatgggtttagatttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||| |||| ||||||| ||||    
T  21710259 atgataaagggtttagatttggatttcatatgataaatgtaaagtttt-tttgatgtgttt 21710200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Complemental strand, 21709447 - 21709414
Alignment:
Q  308 gtttagatttgtatttcatatgataaaggtaaaa 341  Q
    ||||||||||| ||||||||||||||||||||||    
T  21709447 gtttagatttggatttcatatgataaaggtaaaa 21709414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 26025648 - 26025681
Alignment:
Q  308 gtttagatttgtatttcatatgataaaggtaaaa 341  Q
    ||||||||||| ||||||||||||||||||||||    
T  26025648 gtttagatttggatttcatatgataaaggtaaaa 26025681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 702033 - 702093
Alignment:
Q  298 atgataatgggtttagatttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||| |||||||||||||||||    
T  702033 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttt 702093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 757152 - 757092
Alignment:
Q  298 atgataatgggtttagatttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||| |||||||||||||||||    
T  757152 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttt 757092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 770332 - 770392
Alignment:
Q  298 atgataatgggtttagatttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||| |||||||||||||||||    
T  770332 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttt 770392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 35055737 - 35055797
Alignment:
Q  298 atgataatgggtttagatttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    ||||||| ||||||||||||| ||||||||||||||| |||||||||||| ||||||||||    
T  35055737 atgataaagggtttagatttggatttcatatgataaatgtaaaattttatctgatgagttt 35055797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 33074961 - 33075002
Alignment:
Q  315 tttgtatttcatatgataaaggtaaaattttatttgatgagt 356  Q
    |||| ||||||||||||||||||||||| |||||||||||||    
T  33074961 tttgaatttcatatgataaaggtaaaatattatttgatgagt 33075002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 16038664 - 16038724
Alignment:
Q  298 atgataatgggtttagatttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    ||||||| ||||||||||||| ||||||||| | ||| ||||| |||||| ||||||||||    
T  16038664 atgataaagggtttagatttggatttcatataagaaatgtaaagttttatctgatgagttt 16038724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 702411 - 702444
Alignment:
Q  308 gtttagatttgtatttcatatgataaaggtaaaa 341  Q
    ||||||||||| ||||||||||||||||||||||    
T  702411 gtttagatttggatttcatatgataaaggtaaaa 702444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Complemental strand, 756791 - 756758
Alignment:
Q  308 gtttagatttgtatttcatatgataaaggtaaaa 341  Q
    ||||||||||| ||||||||||||||||||||||    
T  756791 gtttagatttggatttcatatgataaaggtaaaa 756758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 770710 - 770743
Alignment:
Q  308 gtttagatttgtatttcatatgataaaggtaaaa 341  Q
    ||||||||||| ||||||||||||||||||||||    
T  770710 gtttagatttggatttcatatgataaaggtaaaa 770743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 16039437 - 16039474
Alignment:
Q  308 gtttagatttgtatttcatatgataaaggtaaaatttt 345  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  16039437 gtttagatttggatttcatatgataaaggtaaagtttt 16039474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 35060215 - 35060252
Alignment:
Q  308 gtttagatttgtatttcatatgataaaggtaaaatttt 345  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  35060215 gtttagatttggatttcatatgataaaggtaaagtttt 35060252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 51598362 - 51598422
Alignment:
Q  298 atgataatgggtttagatttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||| |||||||||||||||||    
T  51598362 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttt 51598422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 16963066 - 16963006
Alignment:
Q  298 atgataatgggtttagatttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||    
T  16963066 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatctgatgagttt 16963006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 51599192 - 51599225
Alignment:
Q  308 gtttagatttgtatttcatatgataaaggtaaaa 341  Q
    ||||||||||| ||||||||||||||||||||||    
T  51599192 gtttagatttggatttcatatgataaaggtaaaa 51599225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 36982972 - 36982929
Alignment:
Q  315 tttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  36982972 tttgaatttcatatgataaaggtaaaattttatttgatgagttt 36982929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 37008411 - 37008368
Alignment:
Q  315 tttgtatttcatatgataaaggtaaaattttatttgatgagttt 358  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  37008411 tttgaatttcatatgataaaggtaaaattttatttgatgagttt 37008368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University