View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_low_25 (Length: 345)
Name: NF13789_low_25
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 30927539 - 30927302
Alignment:
| Q |
16 |
tgttctttgatttttgtgcttcggtgatttaattattttgagtttcgtaaatttttagatcttaaaccttgaaatgtgtgatggatcagtgtgttagtgt |
115 |
Q |
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| T |
30927539 |
tgttctttgatttttgtgcttcggtgatttaattatt--gagtttcgtaaatttttagatcttaaaccttgaagtgtgtgatggctcagtgtgttagtgt |
30927442 |
T |
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| Q |
116 |
cgatctacatgtatgttctacataaattgaatacgagtttaattgcaattaaaaaatgagtttaatt-------------agtgcatgtgtaaaatgatt |
202 |
Q |
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| T |
30927441 |
cgatctacatgtatgttctacataaattgaatacgagtttaattgcaattaaaaaatgagtttaattagtgtgttatatcagtgcatgtgtaaaatgatt |
30927342 |
T |
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| Q |
203 |
atacactgacggaatatactaactaaattcattcaatata |
242 |
Q |
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| T |
30927341 |
atacactgacggaatatactaactaaattcattcaatata |
30927302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 259 - 335
Target Start/End: Complemental strand, 30927318 - 30927242
Alignment:
| Q |
259 |
taaattcattcaatatatgaaagtactaataattaggatttaaagtatatgaaaatgtgtcgttagtctctgttgag |
335 |
Q |
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| T |
30927318 |
taaattcattcaatatatgaaagtactaataattagtatttaaagtatatgaaaatgtgtcgttagtctctgttgag |
30927242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 18358907 - 18358960
Alignment:
| Q |
188 |
atgtgtaaaatgattatacactgacggaatatactaactaaattcattcaatat |
241 |
Q |
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| T |
18358907 |
atgtgtaaaataattatacactgacagagtatactaattaaattcatacaatat |
18358960 |
T |
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