View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13789_low_26 (Length: 338)

Name: NF13789_low_26
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13789_low_26
NF13789_low_26
[»] chr5 (9 HSPs)
chr5 (75-334)||(9595038-9595298)
chr5 (66-334)||(28569666-28569922)
chr5 (94-328)||(26102929-26103163)
chr5 (17-53)||(9595313-9595349)
chr5 (213-292)||(12238140-12238219)
chr5 (105-157)||(36419187-36419240)
chr5 (213-265)||(35077517-35077569)
chr5 (213-265)||(39366201-39366253)
chr5 (236-316)||(41388351-41388431)
[»] chr2 (13 HSPs)
chr2 (69-334)||(9428958-9429220)
chr2 (203-317)||(34664764-34664878)
chr2 (211-317)||(5539890-5539996)
chr2 (199-335)||(3156571-3156707)
chr2 (213-317)||(32487328-32487432)
chr2 (213-316)||(18696820-18696923)
chr2 (213-298)||(37983554-37983639)
chr2 (213-265)||(40990928-40990980)
chr2 (211-310)||(34352562-34352660)
chr2 (66-135)||(16255831-16255899)
chr2 (234-285)||(2760757-2760808)
chr2 (105-291)||(33412577-33412763)
chr2 (203-259)||(33840158-33840214)
[»] chr6 (11 HSPs)
chr6 (66-334)||(12691756-12692022)
chr6 (66-334)||(13094730-13094995)
chr6 (211-316)||(32160164-32160269)
chr6 (227-334)||(2820848-2820955)
chr6 (217-266)||(9580876-9580925)
chr6 (211-300)||(14570918-14571007)
chr6 (219-315)||(12148244-12148340)
chr6 (213-317)||(14392275-14392379)
chr6 (66-144)||(2820689-2820764)
chr6 (213-253)||(9313266-9313306)
chr6 (213-253)||(19248585-19248625)
[»] chr3 (5 HSPs)
chr3 (69-329)||(32516541-32516802)
chr3 (68-149)||(50878130-50878208)
chr3 (66-157)||(52343839-52343930)
chr3 (213-254)||(36730500-36730541)
chr3 (213-253)||(12949709-12949749)
[»] chr4 (9 HSPs)
chr4 (219-324)||(6510518-6510623)
chr4 (66-315)||(38714071-38714318)
chr4 (211-315)||(41482032-41482136)
chr4 (101-183)||(6510400-6510483)
chr4 (216-314)||(46219292-46219390)
chr4 (66-131)||(9369674-9369736)
chr4 (105-135)||(32324767-32324797)
chr4 (211-289)||(54824732-54824810)
chr4 (211-316)||(7704544-7704648)
[»] scaffold1185 (1 HSPs)
scaffold1185 (218-317)||(2045-2144)
[»] chr1 (5 HSPs)
chr1 (66-321)||(16587619-16587871)
chr1 (124-269)||(18715164-18715309)
chr1 (246-322)||(24662581-24662657)
chr1 (105-195)||(750115-750205)
chr1 (213-266)||(10608272-10608325)
[»] chr8 (10 HSPs)
chr8 (66-334)||(43799414-43799683)
chr8 (213-316)||(31136074-31136177)
chr8 (66-132)||(25721390-25721455)
chr8 (212-321)||(25721201-25721310)
chr8 (66-321)||(12677477-12677731)
chr8 (213-266)||(40219879-40219932)
chr8 (66-135)||(33061052-33061120)
chr8 (211-289)||(19298017-19298095)
chr8 (213-298)||(33154804-33154889)
chr8 (213-253)||(9991324-9991364)
[»] chr7 (7 HSPs)
chr7 (105-291)||(33999722-33999908)
chr7 (213-317)||(26159695-26159799)
chr7 (66-157)||(15954483-15954574)
chr7 (213-267)||(372307-372361)
chr7 (105-135)||(13413040-13413070)
chr7 (211-265)||(19480659-19480713)
chr7 (236-300)||(42776613-42776677)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 75 - 334
Target Start/End: Complemental strand, 9595298 - 9595038
Alignment:
Q  75 aaatgagatatattaatacaaacaaagttaatttaccgtgcacaagacatgcaaaaggtaattcaaccaacaaaatacaacaggtatgtgctgctcttaa 174  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9595298 aaatgagatatattaatataaacaaagttaatttaccgtgcacaagacatgcaaaaggtaattcaaccaacaaaatacaacaggtatgtgctgctcttaa 9595199  T
Q  175 aaaagcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatg 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||    
T  9595198 aaaagcaccataaaaaagttagagcaagttacacaggaacacccatataaagaggtgaatttttccaccaatcatgataactatagctaaaagatgtctg 9595099  T
Q  275 tgttgatttcagccacaagaaagaatttggtttaact-ttttcagctatagtagaataatc 334  Q
    |||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| ||||    
T  9595098 tgttgatttcagccacaagaaataatttagtttaacttttttcagctatagtagaagaatc 9595038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 334
Target Start/End: Original strand, 28569666 - 28569922
Alignment:
Q  66 aacaaactaaaatgagatatattaatacaaacaaagttaatttaccgtgcacaagacatgcaaaaggtaattcaaccaacaaaa-tacaacaggtatgtg 164  Q
    |||||||||||||||||||||| | || |||||| ||||||||||||||||||||||||||           |||| ||||| | | ||||| | | |||    
T  28569666 aacaaactaaaatgagatatat-attataaacaaggttaatttaccgtgcacaagacatgc-----------caactaacaacagtgcaacaagaaggtg 28569753  T
Q  165 ctgctcttaaaaaagcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaa 264  Q
     || ||| |||| |||||||| ||||||||| ||||  ||| |||| ||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||    
T  28569754 ttgttct-aaaagagcaccatcaaaaagttaaagcagattatacagtaacacccatacaaaggagttgatgtttccaccagtcatgataactatagctaa 28569852  T
Q  265 aagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttttcagctatagtagaataatc 334  Q
    | ||||  |||| |||||||||| |||  ||||||||| |||||||||| || ||||  |||||| ||||    
T  28569853 atgatgcctgtgatgatttcagcaacataaaagaatttagtttaactttgtcggctaaggtagaagaatc 28569922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 94 - 328
Target Start/End: Complemental strand, 26103163 - 26102929
Alignment:
Q  94 aaacaaagttaatttaccgtgcacaagacatgcaaaaggtaattcaaccaac-aaaatacaacaggtatgtgctgctcttaaaaaagcaccataaaaaag 192  Q
    |||||| | ||||||||||||||||||||||||||| |||||  ||||| || ||||||||||||  | || ||| ||| |||  |||||||| ||||||    
T  26103163 aaacaagggtaatttaccgtgcacaagacatgcaaagggtaagccaacctaccaaaatacaacagtaaggttctgttct-aaaggagcaccatcaaaaag 26103065  T
Q  193 ttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaa 292  Q
    ||| || || |||||||  ||||||||| ||| | | ||||| ||| ||||| ||||||||| || |  ||||| |||| |||| |||||| |||||||     
T  26103064 ttaaagaaaattacacaataacacccatgcaagggaatggatgttttcaccactcatgataattaaatataaaaaatgtctgtgatgattttagccacat 26102965  T
Q  293 gaaagaatttggtttaactttttcagctatagtaga 328  Q
     || | |||| | || ||||||||||||| ||||||    
T  26102964 aaatggatttagcttcactttttcagctaaagtaga 26102929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 9595349 - 9595313
Alignment:
Q  17 gttgattcacaaaattgattattaatttatgtaaaag 53  Q
    |||||||||||||||||||||||||||||||||||||    
T  9595349 gttgattcacaaaattgattattaatttatgtaaaag 9595313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 12238219 - 12238140
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaa 292  Q
    |||||||| ||| |||||||||||||||||||||||| |||| |||| || |||||||| || | |  ||||||||||||    
T  12238219 acacccatgcaaggaagtggatttttccaccaatcattataattatatctgaaagatgtctgagatactttcagccacaa 12238140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 36419187 - 36419240
Alignment:
Q  105 atttaccgtgcacaagacatgcaaaaggtaattcaaccaa-caaaatacaacag 157  Q
    |||||||||||||||||||||||||||||||  | ||||| |||||||||||||    
T  36419187 atttaccgtgcacaagacatgcaaaaggtaaaccgaccaatcaaaatacaacag 36419240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 35077569 - 35077517
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaa 265  Q
    |||||||||||||| || ||||  |||||||| ||||||||||| ||||||||    
T  35077569 acacccatacaaaggagaggatgattccaccagtcatgataactgtagctaaa 35077517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 39366253 - 39366201
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaa 265  Q
    ||||||||||||||||| ||||  |||||||| ||||| ||||| ||||||||    
T  39366253 acacccatacaaagaaggggatgattccaccagtcatggtaactgtagctaaa 39366201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 41388351 - 41388431
Alignment:
Q  236 tttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttttc 316  Q
    |||||| |||||||||||| |  | ||||||| ||| ||| ||||||||| ||| | |||||||||| | |||||||||||    
T  41388351 tttccatcaatcatgataagtggaactaaaagctgtctgttttgatttcaaccaaaggaaagaatttagcttaactttttc 41388431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 69 - 334
Target Start/End: Complemental strand, 9429220 - 9428958
Alignment:
Q  69 aaactaaaatgagatatattaatacaaacaaagttaatttaccgtgcacaagacatgcaaaaggtaattcaaccaacaaaat--acaacaggtatgtgct 166  Q
    |||||||||||||||||||||    |||||| ||||||||| | ||||||||||||||||||| ||| ||||||||||| ||  ||||||   | ||| |    
T  9429220 aaactaaaatgagatatattat---aaacaaggttaatttatcctgcacaagacatgcaaaagataaatcaaccaacaatatttacaacaataaggtgtt 9429124  T
Q  167 gctcttaaaaaagcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaa 266  Q
    |  ||||| |||||||||  ||||||  | |  |||||||||  |||| ||||||||| ||||||||| ||||||||  |||||||||||||||| ||||    
T  9429123 gtacttaagaaagcaccaacaaaaaggaaaa--aagttacacctgaactcccatacaaggaagtggatgtttccacccgtcatgataactatagcgaaaa 9429026  T
Q  267 gatgtatgtgttgatttcagccacaagaaagaatttggtttaactttttcagctatagtagaataatc 334  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||| ||||| | ||||| ||||    
T  9429025 gatgcatgtgttgatttcagccataagaaagaatttagtttaactttttgagctagaatagaagaatc 9428958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 34664764 - 34664878
Alignment:
Q  203 ttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaattt 302  Q
    |||||||  |||||||||||||  || |||||||||||| || |||||||||||||||||||||||||| ||   || ||| ||||||||||||||||||    
T  34664764 ttacacacaaacacccatacaagaaattggatttttccatcattcatgataactatagctaaaagatgtctgaaatgcttttagccacaagaaagaattt 34664863  T
Q  303 ggtttaactttttca 317  Q
      ||||||| |||||    
T  34664864 aatttaactatttca 34664878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 211 - 317
Target Start/End: Complemental strand, 5539996 - 5539890
Alignment:
Q  211 gaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaac 310  Q
    ||||| ||||||||||||| |||| ||||||||| ||||||||| |||||||||| ||    ||| ||||||||| |||||||||  ||||||| |||||    
T  5539996 gaacatccatacaaagaagcggatgtttccaccagtcatgataattatagctaaaggacacctgttttgatttcaaccacaagaataaatttggcttaac 5539897  T
Q  311 tttttca 317  Q
    |||||||    
T  5539896 tttttca 5539890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 335
Target Start/End: Complemental strand, 3156707 - 3156571
Alignment:
Q  199 caagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaaga 298  Q
    ||||||| |||| ||| | |||||| |||||||||| ||||||||||| |||| ||||||||||||| |  | |||| | ||||||||||||||||||||    
T  3156707 caagttagacagaaactctcatacacagaagtggatgtttccaccaattatgaaaactatagctaaaggcggcatgtttagatttcagccacaagaaaga 3156608  T
Q  299 atttggtttaactttttcagctatagtagaataatct 335  Q
     ||    ||||| |||||||||| | ||||| |||||    
T  3156607 gttcaacttaaccttttcagctaaaatagaagaatct 3156571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 317
Target Start/End: Original strand, 32487328 - 32487432
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactt 312  Q
    |||||||||||||  || |||| ||| ||||||||||||||||| ||| |||| ||   |||| ||||||||||||||||||| |||||| | |||||||    
T  32487328 acacccatacaaatgagcggatgtttgcaccaatcatgataactgtagttaaatgacacatgttttgatttcagccacaagaatgaatttagcttaactt 32487427  T
Q  313 tttca 317  Q
    |||||    
T  32487428 tttca 32487432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 316
Target Start/End: Original strand, 18696820 - 18696923
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactt 312  Q
    ||||||||||||||||| || ||||||||||||||||||||| | ||  ||||||    |||| ||||||||||||| || ||||| ||| ||||||| |    
T  18696820 acacccatacaaagaagcgggtttttccaccaatcatgataagtgtaaataaaagtcacatgttttgatttcagccataaaaaagagtttagtttaacct 18696919  T
Q  313 tttc 316  Q
    ||||    
T  18696920 tttc 18696923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 298
Target Start/End: Original strand, 37983554 - 37983639
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaaga 298  Q
    |||| ||||||||| || |||| |||||||||||||||||||||||||||||| |  |  | | ||||||||| ||||||||||||    
T  37983554 acactcatacaaaggagaggatgtttccaccaatcatgataactatagctaaatgtcgcctattttgatttcaaccacaagaaaga 37983639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 40990980 - 40990928
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaa 265  Q
    |||||||||||||| ||||||| |||||||||||| | |||||||||||||||    
T  40990980 acacccatacaaaggagtggatgtttccaccaatcgtaataactatagctaaa 40990928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 310
Target Start/End: Original strand, 34352562 - 34352660
Alignment:
Q  211 gaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaac 310  Q
    |||||| |||||||||||| ||||  |||||| |||||||||||||||||||||| |    |||| ||| ||||||||| |||||||||||  |||||||    
T  34352562 gaacactcatacaaagaagcggatgcttccac-aatcatgataactatagctaaatgtcacatgttttgctttcagccataagaaagaattgagtttaac 34352660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 16255899 - 16255831
Alignment:
Q  66 aacaaactaaaatgagatatattaatacaaacaaagttaatttaccgtgcacaagacatgcaaaaggtaa 135  Q
    ||||||||||||||||| |||| | || |||||| |   |||||||||||||||||||||||||||||||    
T  16255899 aacaaactaaaatgagacatat-attataaacaatggcgatttaccgtgcacaagacatgcaaaaggtaa 16255831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 2760808 - 2760757
Alignment:
Q  234 tttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttca 285  Q
    ||||||||||||||||||||||| || ||||||| ||| ||| |||||||||    
T  2760808 tttttccaccaatcatgataactgtaactaaaagctgtctgttttgatttca 2760757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 291
Target Start/End: Complemental strand, 33412763 - 33412577
Alignment:
Q  105 atttaccgtgcacaagacatgcaaaaggtaattcaaccaa-caaaatacaacaggtatgtgctgctcttaaaaaagcaccataaaaaagttagagcaagt 203  Q
    |||||||||||||||||||||||||||||||  | ||||| ||| |||||||||    |||||  | ||  || |||||||||||||||||| |  || |    
T  33412763 atttaccgtgcacaagacatgcaaaaggtaaaccgaccaaccaagatacaacagtagggtgct-atttttgaatagcaccataaaaaagttacataaaat 33412665  T
Q  204 tacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccaca 291  Q
    ||||||  ||||||||| ||| | | ||| | ||||||||| |||| ||||  |||  | |||||||| || | ||||||||||||||    
T  33412664 tacacaataacacccatgcaagggattgggtgtttccaccagtcataataagaataaatcaaagatgtttgcgatgatttcagccaca 33412577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 33840214 - 33840158
Alignment:
Q  203 ttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactata 259  Q
    ||||||| | |||| |||||| |||||||||| ||||||| |||| |||||||||||    
T  33840214 ttacacatggacactcatacagagaagtggatatttccactaatcgtgataactata 33840158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 66 - 334
Target Start/End: Original strand, 12691756 - 12692022
Alignment:
Q  66 aacaaactaaaatgagatatattaatacaaacaaagttaatttaccgtgcacaagacatgcaaaaggtaattcaaccaacaaaat--acaacaggtatgt 163  Q
    ||||||||||||||||||||||||    ||||||| || |||||||  ||||||||||||||||||||||  |||||||  | ||  ||||||   | ||    
T  12691756 aacaaactaaaatgagatatattat---aaacaaaattgatttaccccgcacaagacatgcaaaaggtaaaccaaccaaggatatttacaacaacgaggt 12691852  T
Q  164 gctgctcttaaaaaagcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagcta 263  Q
    |||     |||||||||||||  ||||||| ||| ||| ||||||| |||||||||||||||| ||||||| ||||||||  ||||||||||||||||||    
T  12691853 gctaaaaataaaaaagcaccagcaaaaagtgaga-caaattacacaagaacacccatacaaaggagtggatgtttccaccggtcatgataactatagcta 12691951  T
Q  264 aaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttttcagctatagtagaataatc 334  Q
    |||| ||| ||| | |||||||||||||||||||||||   ||| | |||||| |||||| ||||| ||||    
T  12691952 aaagttgtctgtttagatttcagccacaagaaagaattcaattttattttttccgctataatagaagaatc 12692022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 334
Target Start/End: Original strand, 13094730 - 13094995
Alignment:
Q  66 aacaaactaaaatgagatatattaatacaaacaaagttaatttaccgtgcacaagacatgcaaaaggtaattcaaccaac-aaaatacaacaggtatgtg 164  Q
    |||||||||||||||||||||| | || |||||| ||||||||| | || ||||||||||||||||||||  ||||| || |||||||||||   | ||     
T  13094730 aacaaactaaaatgagatatat-attataaacaaggttaatttatcatgaacaagacatgcaaaaggtaaaccaacctaccaaaatacaacaaaaaggta 13094828  T
Q  165 ctgctcttaaaaaagcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaa 264  Q
     || ||| ||| ||||||||| || ||   ||||||  |||||||  ||||||||| ||| | ||| ||| ||||||||| |||||||||  |||  |||    
T  13094829 ttgttct-aaagaagcaccatcaataaa--agagcacattacacaataacacccatgcaagggagtagatgtttccaccagtcatgataatcatatataa 13094925  T
Q  265 aagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttttcagctatagtagaataatc 334  Q
    ||||||| |||| |||||||||||||| |||||||||| | || ||||||||||||| ||||||| ||||    
T  13094926 aagatgtctgtgatgatttcagccacatgaaagaatttagattcactttttcagctaaagtagaagaatc 13094995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 32160269 - 32160164
Alignment:
Q  211 gaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaac 310  Q
    |||||||||||||||| || |||| |||||| ||||||||| | ||||| ||||||| ||| ||| ||||||||||||| ||  |||| ||| |||||||    
T  32160269 gaacacccatacaaaggagcggatgtttccatcaatcatgacatctataactaaaagttgtttgttttgatttcagccataaataagagtttagtttaac 32160170  T
Q  311 tttttc 316  Q
     |||||    
T  32160169 cttttc 32160164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 334
Target Start/End: Original strand, 2820848 - 2820955
Alignment:
Q  227 aagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttttcagctatagta 326  Q
    |||||| | ||||||||  |||||||||||||||||||||| ||| | ||  ||||||||||||||||||||||    ||||||||||| ||||| | ||    
T  2820848 aagtgggtgtttccacctgtcatgataactatagctaaaagttgtctctgaagatttcagccacaagaaagaatccaatttaacttttttagctagaata 2820947  T
Q  327 gaataatc 334  Q
    ||| ||||    
T  2820948 gaagaatc 2820955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 9580876 - 9580925
Alignment:
Q  217 ccatacaaagaagtggatttttccaccaatcatgataactatagctaaaa 266  Q
    ||||| ||||||| |||| |||||||||||||||||||||||||||||||    
T  9580876 ccatataaagaaggggatgtttccaccaatcatgataactatagctaaaa 9580925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 14571007 - 14570918
Alignment:
Q  211 gaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaat 300  Q
    |||||||||||||||| ||||||||| |||||||||||| ||||| |||  || ||||| ||||  ||| ||||| |||||| |||||||    
T  14571007 gaacacccatacaaaggagtggatttgtccaccaatcataataacaataattagaagatatatgctttgctttcatccacaaaaaagaat 14570918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 12148244 - 12148340
Alignment:
Q  219 atacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaacttttt 315  Q
    ||||||||||| |  |||| ||||||||||||||||||||| |||||||  |  ||| ||||||||||||| || ||||| ||| ||||||| ||||    
T  12148244 atacaaagaagcgagttttcccaccaatcatgataactataactaaaagtcgcttgttttgatttcagccataaaaaagagtttagtttaacctttt 12148340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 317
Target Start/End: Original strand, 14392275 - 14392379
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactt 312  Q
    |||| ||||||||| || | || ||||||||  ||||||||||||||||||||||    |||| || ||||||||| |||||| || ||| |||||||||    
T  14392275 acactcatacaaaggagagaatgtttccaccgttcatgataactatagctaaaagtcacatgttttaatttcagccgcaagaatgagtttagtttaactt 14392374  T
Q  313 tttca 317  Q
    |||||    
T  14392375 tttca 14392379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 2820689 - 2820764
Alignment:
Q  66 aacaaactaaaatgagatatattaatacaaacaaagttaatttaccgtgcacaagacatgcaaaaggtaattcaaccaa 144  Q
    ||||||| ||||||| ||||||||    |||||| || |||||||| |||||||||||||||||||||||  |||||||    
T  2820689 aacaaacaaaaatgatatatattat---aaacaaggtgaatttaccttgcacaagacatgcaaaaggtaaaccaaccaa 2820764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 9313306 - 9313266
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgata 253  Q
    |||| |||||||||||| ||||| |||||||||||||||||    
T  9313306 acactcatacaaagaaggggattattccaccaatcatgata 9313266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 19248585 - 19248625
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgata 253  Q
    ||||||||||| | |||||||| ||||||||||||||||||    
T  19248585 acacccatacacaaaagtggatgtttccaccaatcatgata 19248625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 69 - 329
Target Start/End: Original strand, 32516541 - 32516802
Alignment:
Q  69 aaactaaaatgagatatat-taatacaaacaaagttaatttaccgtgcacaagacatgcaaaaggtaattcaaccaac-aaaatacaacaggtatgtgct 166  Q
    ||||||||||||||||||| || || |||||| ||||||||  |||||| ||||||||||||||||||  |||||  | ||||||||| ||    ||| |    
T  32516541 aaactaaaatgagatatatatattataaacaaggttaatttgtcgtgcataagacatgcaaaaggtaaaccaacctgccaaaatacaagagtagggtgtt 32516640  T
Q  167 gctcttaaaaaagcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaa 266  Q
    | ||| |||  |||||||| || |||||||||||  |||||||  ||||||||||||| | ||||||| ||| ||||| |||||||||  |||  |||||    
T  32516641 gttct-aaaggagcaccatcaagaagttagagcacattacacaataacacccatacaagggagtggatgttttcaccagtcatgataatcatatataaaa 32516739  T
Q  267 gatgtatgtgttgatttcagccacaagaaagaatttggtttaactttttcagctatagtagaa 329  Q
    |||||  ||| ||| |||||||||| |||||||||| |||| ||||||||| ||| |||||||    
T  32516740 gatgtcagtgatgacttcagccacatgaaagaatttagtttcactttttcaactaaagtagaa 32516802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 50878130 - 50878208
Alignment:
Q  68 caaactaaaatgagatatattaatacaaacaaagttaatttaccgtgcacaagacatgcaaaaggtaattcaaccaacaaaa 149  Q
    ||||||||||||| ||||||||    ||||||  ||||||||||||||| |||||||||||||||||| | |||||||||||    
T  50878130 caaactaaaatgacatatattat---aaacaagattaatttaccgtgcataagacatgcaaaaggtaaattaaccaacaaaa 50878208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 157
Target Start/End: Original strand, 52343839 - 52343930
Alignment:
Q  66 aacaaactaaaatgagatatattaatacaaacaaagttaatttaccgtgcacaagacatgcaaaaggtaattcaaccaa-caaaatacaacag 157  Q
    ||||||||||||||||| |||| | ||  ||||| | | |||||||||||||||||||||||||||||||  | ||||| |||||||||||||    
T  52343839 aacaaactaaaatgagacatat-attatgaacaatggtgatttaccgtgcacaagacatgcaaaaggtaaacctaccaaccaaaatacaacag 52343930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 36730500 - 36730541
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgataa 254  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  36730500 acacccatacaaagaagcaggtttttccaccaatcatgataa 36730541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 12949709 - 12949749
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgata 253  Q
    ||||||||||||||||| || | ||||||||||||||||||    
T  12949709 acacccatacaaagaagcgggtgtttccaccaatcatgata 12949749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 219 - 324
Target Start/End: Original strand, 6510518 - 6510623
Alignment:
Q  219 atacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttttcag 318  Q
    |||||| | |||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||||| |||||  |||||| |||||||    
T  6510518 atacaaggtagtgaatttttccaccagtcatgataactatagctaaaagatgtctctgttgatttcaaccacaagaaataatttaatttaaccttttcag 6510617  T
Q  319 ctatag 324  Q
    ||||||    
T  6510618 ctatag 6510623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 315
Target Start/End: Original strand, 38714071 - 38714318
Alignment:
Q  66 aacaaactaaaatgagatatattaatacaaacaaagttaatttaccgtgcacaagacatgcaaaaggtaattcaacc-aacaaaatacaacaggtatgtg 164  Q
    ||||||||||||||||||||||||    | |||||||||||||||| |||||||||||||||||| ||||  ||||| | ||| ||||||||   | |||    
T  38714071 aacaaactaaaatgagatatattat---agacaaagttaatttaccatgcacaagacatgcaaaaagtaaaccaacctaccaacatacaacatagaggtg 38714167  T
Q  165 ctgctcttaaaaaagcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaa 264  Q
    ||| ||  | |  |||||||  ||||||||| ||||  |||||||  ||||| ||| ||| | |  || | |||||||||||||||||||  |||  |||    
T  38714168 ctgttcaaataggagcaccaacaaaaagttaaagcacattacacaataacactcatgcaagggaccgggtgtttccaccaatcatgataatcatatataa 38714267  T
Q  265 aagatgtatgtgttgatttcagccacaagaaagaatttggtttaacttttt 315  Q
    ||| ||| || | |||||||||||||| |||| |||||  ||| |||||||    
T  38714268 aagttgtctgagatgatttcagccacatgaaaaaatttaatttcacttttt 38714318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 315
Target Start/End: Original strand, 41482032 - 41482136
Alignment:
Q  211 gaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaac 310  Q
    |||| |||||||| || || || | ||||||||||||||||||||| || ||||||  || |||| ||||||||||||| |  ||||||||| | |||||    
T  41482032 gaacgcccatacacaggagagggtgtttccaccaatcatgataactgtaactaaaaattgcatgttttgatttcagccaaagaaaagaatttagcttaac 41482131  T
Q  311 ttttt 315  Q
    |||||    
T  41482132 ttttt 41482136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 6510400 - 6510483
Alignment:
Q  101 gttaatttaccgtgcacaagacatgcaaaaggtaattcaaccaaca-aaatacaacaggtatgtgctgctcttaaaaaagcacc 183  Q
    |||||||||||||||||||||||||||||||||||  |||||| || |||||||| | |   ||||||||||||| || |||||    
T  6510400 gttaatttaccgtgcacaagacatgcaaaaggtaaaccaaccagcacaaatacaaaacgatggtgctgctcttaagaaggcacc 6510483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 46219390 - 46219292
Alignment:
Q  216 cccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttt 314  Q
    |||||||||||||| ||||  |||||||| ||||| ||||| ||||||||  || |  || ||||||||| ||| |||||||| ||| |||||||||||    
T  46219390 cccatacaaagaaggggatgattccaccactcatggtaactgtagctaaataatctcggttttgatttcaaccataagaaagagtttagtttaactttt 46219292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 9369674 - 9369736
Alignment:
Q  66 aacaaactaaaatgagatatattaatacaaacaaagttaatttaccgtgcacaagacatgcaaaag 131  Q
    ||||||||||||||| ||||||||    ||| || ||| |||||||||||||||||||||||||||    
T  9369674 aacaaactaaaatgatatatattat---aaataaggttgatttaccgtgcacaagacatgcaaaag 9369736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 135
Target Start/End: Complemental strand, 32324797 - 32324767
Alignment:
Q  105 atttaccgtgcacaagacatgcaaaaggtaa 135  Q
    |||||||||||||||||||||||||||||||    
T  32324797 atttaccgtgcacaagacatgcaaaaggtaa 32324767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 54824732 - 54824810
Alignment:
Q  211 gaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagcca 289  Q
    |||||||||| || | ||| |||| ||||||||||||||||||||| |||||||| ||  | ||| | |||||||||||    
T  54824732 gaacacccatgcacaaaagcggatgtttccaccaatcatgataactgtagctaaatgacatctgtttcgatttcagcca 54824810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 7704544 - 7704648
Alignment:
Q  211 gaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaac 310  Q
    ||||||||||||| ||||| |  |||||||| || ||||||||||||||   |||||||| |||| ||||||||| ||| || |||||| |  |||||||    
T  7704544 gaacacccatacagagaagagt-tttttccatcagtcatgataactataagaaaaagatgcatgttttgatttcaaccataaaaaagaagtcagtttaac 7704642  T
Q  311 tttttc 316  Q
     |||||    
T  7704643 cttttc 7704648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1185 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold1185
Description:

Target: scaffold1185; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 218 - 317
Target Start/End: Complemental strand, 2144 - 2045
Alignment:
Q  218 catacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttttca 317  Q
    ||||||||| || |||| ||||||||| ||||||||| ||||||||||||   ||||| ||||||||||||||||||| || ||| ||||||||||||||    
T  2144 catacaaaggagaggatgtttccaccattcatgataagtatagctaaaagtcatatgttttgatttcagccacaagaatgagtttagtttaactttttca 2045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 321
Target Start/End: Complemental strand, 16587871 - 16587619
Alignment:
Q  66 aacaaactaaaatgagatatattaatacaaacaaagttaatttaccgtgcacaagacatgcaaaaggtaattcaaccaacaaaa--tacaacaggtatgt 163  Q
    |||||| |||||||||||||||||    ||||||| || ||||||| |||||||||||||||||||| ||   | |||| || |  |||||||   | ||    
T  16587871 aacaaaataaaatgagatatattat---aaacaaaattgatttaccctgcacaagacatgcaaaaggaaaactatccaagaatatttacaacaacaaggt 16587775  T
Q  164 gctgctcttaaaaaagcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagcta 263  Q
    ||||   ||| ||||||||||  |||||| |  | ||| || ||||  ||||||| ||||||| ||| ||| ||||||||| || |||||| ||||||||    
T  16587774 gctgaaattataaaagcaccagcaaaaagct--aacaaattgcacattaacacccttacaaaggagttgatgtttccaccagtcgtgataattatagcta 16587677  T
Q  264 aaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttttcagcta 321  Q
    |||| ||| ||| | |||||||||||||||||| ||||  |||||| |||||||||||    
T  16587676 aaagttgtctgtttagatttcagccacaagaaataattcagtttaattttttcagcta 16587619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 269
Target Start/End: Complemental strand, 18715309 - 18715164
Alignment:
Q  124 tgcaaaaggtaattcaaccaacaaaatacaacaggtatgtgctgctcttaaaaaagcaccataaaaaagttagagcaagttacacaggaacacccataca 223  Q
    ||||||||||||  ||||||||| || |||||| |   |||  | |||||| |||||||||  ||| ||||| ||  | |||||||| |||| |||||||    
T  18715309 tgcaaaaggtaaaccaaccaacacaaaacaacaagatggtgtcgttcttaataaagcaccaggaaagagttatagtcaattacacagtaacatccataca 18715210  T
Q  224 aagaagtggatttttccaccaatcatgataactatagctaaaagat 269  Q
    | ||||||||||||||||||||||||||||||||||  ||||||||    
T  18715209 aggaagtggatttttccaccaatcatgataactataattaaaagat 18715164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 322
Target Start/End: Complemental strand, 24662657 - 24662581
Alignment:
Q  246 tcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttttcagctat 322  Q
    |||| ||||||||| |||||  | || |||| ||||||||||||||||||||| ||| |||||||||||||| ||||    
T  24662657 tcataataactataactaaacaacgtttgtgatgatttcagccacaagaaagattttagtttaactttttcaactat 24662581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 750115 - 750205
Alignment:
Q  105 atttaccgtgcacaagacatgcaaaaggtaattcaaccaa-caaaatacaacaggtatgtgctgctcttaaaaaagcaccataaaaaagtta 195  Q
    ||||||| |||||||||||||||||||||||  ||||||| ||| ||||||||   | |||||  | |||||| ||||||||||||||||||    
T  750115 atttaccatgcacaagacatgcaaaaggtaaaccaaccaaccaagatacaacaataaggtgct-attttaaaagagcaccataaaaaagtta 750205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 10608325 - 10608272
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaa 266  Q
    |||||||||||||  || |||| |||||||||||||| ||||||||| ||||||    
T  10608325 acacccatacaaaagagcggatgtttccaccaatcataataactataactaaaa 10608272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 66 - 334
Target Start/End: Original strand, 43799414 - 43799683
Alignment:
Q  66 aacaaactaaaatgagatatattaatacaaacaaagttaatttaccgtgcacaagacatgcaaaaggtaattcaaccaacaaaat--acaacaggtatgt 163  Q
    ||||||||||||||| ||||||||    ||||| | |||||||||| ||||||||||||||||| |||||  ||||||| || ||  ||||||   |  |    
T  43799414 aacaaactaaaatgaaatatattat---aaacacaattaatttaccctgcacaagacatgcaaagggtaaaccaaccaagaatatttacaacaacaagat 43799510  T
Q  164 gctgctcttaaaaaagcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagcta 263  Q
    ||||   |||  |||||||||  ||||||||| | ||| ||| ||| |||| | ||||||| | ||| ||| ||||||||  ||||| ||||||||||||    
T  43799511 gctgaaattatgaaagcaccagcaaaaagttaaaacaaattatacatgaactctcatacaagggagtagatgtttccacccgtcatggtaactatagcta 43799610  T
Q  264 aaaga--tgtatgtgttgatttcagccacaagaaagaatttggtttaactttttcagctatagtagaataatc 334  Q
    |||||  ||  ||| | |||||||||||||||||| ||||   ||||||||||||||||| | ||||| ||||    
T  43799611 aaagagttgcttgtttagatttcagccacaagaaataattcattttaactttttcagctagaatagaagaatc 43799683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 316
Target Start/End: Original strand, 31136074 - 31136177
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactt 312  Q
    ||||||||||||||||| || ||||||||||||||||||||||| || |||||||     ||| ||||||||||||| || ||||| ||| ||||||| |    
T  31136074 acacccatacaaagaagcgggtttttccaccaatcatgataactgtaactaaaagtcacctgttttgatttcagccataaaaaagagtttagtttaacct 31136173  T
Q  313 tttc 316  Q
    ||||    
T  31136174 tttc 31136177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 25721455 - 25721390
Alignment:
Q  66 aacaaactaaaatgagatatattaatacaaacaaagttaatttaccgtgcacaagacatgcaaaagg 132  Q
    |||||||||||||||||| ||| | || |||||| ||||||||||||||||||||||||||||||||    
T  25721455 aacaaactaaaatgagatttat-attataaacaaggttaatttaccgtgcacaagacatgcaaaagg 25721390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 321
Target Start/End: Complemental strand, 25721310 - 25721201
Alignment:
Q  212 aacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaact 311  Q
    ||||||||||||  | ||||||| ||||||||| ||||||||| |||||||||| ||||  ||| ||||||||| |||||  ||||||| |  |||||||    
T  25721310 aacacccatacatgggagtggatgtttccaccagtcatgataagtatagctaaatgatggttgtattgatttcaaccacataaaagaatctaatttaact 25721211  T
Q  312 ttttcagcta 321  Q
    || |||||||    
T  25721210 ttatcagcta 25721201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 321
Target Start/End: Original strand, 12677477 - 12677731
Alignment:
Q  66 aacaaactaaaatgagatatattaatacaaacaaagttaatttaccgtgcacaagacatgcaaaaggtaattcaaccaacaaa-atacaacaggtatgtg 164  Q
    |||||||||||||||||||||| | ||  ||||| |   |||||||||||||||||||||||||||||||  | |  ||| || |||||  ||  | |||    
T  12677477 aacaaactaaaatgagatatat-attatgaacaatggcgatttaccgtgcacaagacatgcaaaaggtaaaccgattaaccaagatacagtagtaaggtg 12677575  T
Q  165 ctgctcttaaaaaagcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaa 264  Q
    ||  | ||| || |||||||||||||||||| || || |||||||  ||||||||| ||| ||| ||| | ||||||||| |||| ||||  |||  |||    
T  12677576 ctatt-ttagaagagcaccataaaaaagttacagaaaattacacaataacacccatgcaaggaattgggtgtttccaccagtcataataagaataaataa 12677674  T
Q  265 aagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttttcagcta 321  Q
    |||||||||| | || |||||||||||  ||||| ||  | || |||||||||||||    
T  12677675 aagatgtatgcgatgctttcagccacataaaagagttcagcttcactttttcagcta 12677731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 40219932 - 40219879
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaa 266  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||||| ||||    
T  40219932 acacccatacaaagaatgggattttgccaccaatcatgataactatagccaaaa 40219879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 33061120 - 33061052
Alignment:
Q  66 aacaaactaaaatgagatatattaatacaaacaaagttaatttaccgtgcacaagacatgcaaaaggtaa 135  Q
    |||||||||||||||||||||| | ||  ||||| |   |||||||||||||||||||||||||||||||    
T  33061120 aacaaactaaaatgagatatat-attatgaacaatgacgatttaccgtgcacaagacatgcaaaaggtaa 33061052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 19298095 - 19298017
Alignment:
Q  211 gaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagcca 289  Q
    |||||||||| || | ||| |||| ||||||||||||||||||||| |||||||| ||  | ||| | |||||||||||    
T  19298095 gaacacccatgcacaaaagcggatgtttccaccaatcatgataactgtagctaaatgacatctgtttcgatttcagcca 19298017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 298
Target Start/End: Complemental strand, 33154889 - 33154804
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaaga 298  Q
    ||||||||||||  |||||||| | |||||||||||||||||| ||| | ||| ||||| ||| | | ||||| |||||| |||||    
T  33154889 acacccatacaagaaagtggatgtctccaccaatcatgataacaataacaaaaggatgtctgtttagctttcaaccacaaaaaaga 33154804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 9991364 - 9991324
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgata 253  Q
    ||||||||||||||||| || | ||||||||||||||||||    
T  9991364 acacccatacaaagaagcgggtgtttccaccaatcatgata 9991324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 291
Target Start/End: Complemental strand, 33999908 - 33999722
Alignment:
Q  105 atttaccgtgcacaagacatgcaaaaggtaattcaaccaa-caaaatacaacaggtatgtgctgctcttaaaaaagcaccataaaaaagttagagcaagt 203  Q
    |||||||||||||||||||||||||||||||  ||||||| ||| |||||||||  | |||||  | |||||  | |||||||||||||||| || || |    
T  33999908 atttaccgtgcacaagacatgcaaaaggtaaaccaaccaaccaagatacaacagtaaagtgct-attttaaatgaacaccataaaaaagttatagaaaat 33999810  T
Q  204 tacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccaca 291  Q
    |||||   ||||||||| ||| | | ||||| |||||||  ||||| |||| || | ||||||||||| || | ||||||||||||||    
T  33999809 tacactataacacccatgcaagggattggatgtttccactgatcatcataagtaaaactaaaagatgtctgcgatgatttcagccaca 33999722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 317
Target Start/End: Complemental strand, 26159799 - 26159695
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactt 312  Q
    ||||||||| |||| || |||| ||||||||| |||||||||||||| ||||| ||   ||||  |||||||| ||||||||| |||||| | |||||||    
T  26159799 acacccatataaaggagcggatgtttccaccagtcatgataactataactaaatgacacatgttatgatttcaaccacaagaatgaatttagcttaactt 26159700  T
Q  313 tttca 317  Q
    |||||    
T  26159699 tttca 26159695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 15954574 - 15954483
Alignment:
Q  66 aacaaactaaaatgagatatattaatacaaacaaagttaatttaccgtgcacaagacatgcaaaaggtaattcaaccaa-caaaatacaacag 157  Q
    ||||||||||||||||| |||| | || |||||| |   |||||||||| ||||||||||||||||||||  | ||||| |||||||||||||    
T  15954574 aacaaactaaaatgagacatat-attataaacaatggcgatttaccgtggacaagacatgcaaaaggtaaaccgaccaaccaaaatacaacag 15954483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 372307 - 372361
Alignment:
Q  213 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaag 267  Q
    |||||||||||||| ||||  |||||||||||||||||||| || || |||||||    
T  372307 acacccatacaaaggagtgagtttttccaccaatcatgatagctgtaactaaaag 372361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 135
Target Start/End: Complemental strand, 13413070 - 13413040
Alignment:
Q  105 atttaccgtgcacaagacatgcaaaaggtaa 135  Q
    |||||||||||||||||||||||||||||||    
T  13413070 atttaccgtgcacaagacatgcaaaaggtaa 13413040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 19480659 - 19480713
Alignment:
Q  211 gaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaa 265  Q
    ||||||||||||||||||| |||| ||||||||| ||||| ||||| || |||||    
T  19480659 gaacacccatacaaagaaggggatgtttccaccagtcatggtaactgtaactaaa 19480713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 42776677 - 42776613
Alignment:
Q  236 tttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaat 300  Q
    |||||||||||||| ||||| |||||||||||||| |||| |||  ||||  ||||| |||||||    
T  42776677 tttccaccaatcataataacaatagctaaaagatggatgttttgccttcactcacaaaaaagaat 42776613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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