View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_low_30 (Length: 296)
Name: NF13789_low_30
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_low_30 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 54314775 - 54315073
Alignment:
| Q |
1 |
acaatgaatgtaaaggtacctaattgttccgatagattttggccttttctgacttctttgaaaaagaaacatcctacttattaaattatgaccataaaag |
100 |
Q |
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| T |
54314775 |
acaatgaatgtaaaggtacctaattgttccgatagattttggccttttctgacttctttgaaaaagaaacatcctacttattaaattatgaccataaaag |
54314874 |
T |
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| Q |
101 |
aaaacacaaataaaattaatcaaacatcctaattatgatcaattcactcc---aagnnnnnnnnnnnnngtgcaagttagtaagctgcactcacctaaaa |
197 |
Q |
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| T |
54314875 |
aaaacacaaataaaattaatcaaacatcctaattatgatcaattcactccaaaaaaaaaaaacaataaggtgcaagttagcaagctacactcacctaaaa |
54314974 |
T |
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| Q |
198 |
ttattataacagagtttgcaactttctatcggtgagtaattgattccttatcataagcaattttttgaccaaattaaaatacagttgcgatctagactc |
296 |
Q |
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| T |
54314975 |
ttattataacagattttgcaactttctatcggtgagtaattgattccttatcataagcaattttttgaccaaattaaaatacagttgcgttctagactc |
54315073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 54316082 - 54316183
Alignment:
| Q |
167 |
gtgcaagttagtaagctgcactcacctaaaattattataacagagtttgcaactttctatcggtgagtaattgattccttatcataagcaattttttgac |
266 |
Q |
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| T |
54316082 |
gtgcaagttagcaagttgcacccacctagaattattataacaaagtttccaactttctatcggtgagtaattgattcattatcataaacaattttttgac |
54316181 |
T |
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| Q |
267 |
ca |
268 |
Q |
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|| |
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| T |
54316182 |
ca |
54316183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 127
Target Start/End: Original strand, 54315953 - 54315992
Alignment:
| Q |
88 |
atgaccataaaagaaaacacaaataaaattaatcaaacat |
127 |
Q |
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| T |
54315953 |
atgaccataaaagaaaacacaaataaaattaatcaaacat |
54315992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 34064611 - 34064531
Alignment:
| Q |
202 |
tataacagagtttgcaactttctatcggtgagtaattgattccttatcataagcaatt-ttttgaccaaattaaaatacag |
281 |
Q |
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|||| |||||||| ||||||||||||||||| |||||||||||| |||||||||||| |||| ||||||||||||||||| |
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| T |
34064611 |
tatagcagagtttctaactttctatcggtgaggaattgattccttgtcataagcaatttttttaaccaaattaaaatacag |
34064531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 56459484 - 56459404
Alignment:
| Q |
202 |
tataacagagtttgcaactttctatcggtgagtaattgattccttatcataagcaatt-ttttgaccaaattaaaatacag |
281 |
Q |
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|||| |||||||| ||||||||||||||||| |||||||||||| |||||||||||| |||| ||||||||||||||||| |
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| T |
56459484 |
tatagcagagtttctaactttctatcggtgaggaattgattccttgtcataagcaattttttttaccaaattaaaatacag |
56459404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 19402659 - 19402739
Alignment:
| Q |
202 |
tataacagagtttgcaactttctatcggtgagtaattgattccttatcataagcaa-ttttttgaccaaattaaaatacag |
281 |
Q |
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|||| |||||||| ||||||||||||||||| |||||||||||| |||||||||| |||||| ||||||||||||||||| |
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| T |
19402659 |
tatagcagagtttctaactttctatcggtgaggaattgattccttgtcataagcaattttttttaccaaattaaaatacag |
19402739 |
T |
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