View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_low_34 (Length: 273)
Name: NF13789_low_34
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 44879869 - 44880119
Alignment:
| Q |
18 |
aagaatataaccatttcactctctgttctttgcattttctcaccctgtctgatgctgctcacttcattttcaggattaaaattcttcagctcgaatgact |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44879869 |
aagaatttaaccatttcactctctgttctttgcattttctcaccctgtctgatgctgctcacttcattttcaggattaaaattcttcagctcgaatgact |
44879968 |
T |
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| Q |
118 |
acaccatccaattcctattttatttcatctatttaaacttacaaatttcaatggcatttctgttgtcttcctttttgtcagatgttaagaccgctgcagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44879969 |
acaccatccaattcctattttatttcatctatttaaacttacaaatttcaatggcatttctgttgtcttcctttttgtcagatgttaagaccgctgcagg |
44880068 |
T |
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| Q |
218 |
tttgtttctacttccagttgttcataataattagtgcattagtattttctt |
268 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44880069 |
tttgtttctacttccagttgttcataataattggtgcattagtattttctt |
44880119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 44862079 - 44862329
Alignment:
| Q |
18 |
aagaatataaccatttcactctctgttctttgcattttctcaccctgtctgatgctgctcacttcattttcaggattaaaattcttcagctcgaatgact |
117 |
Q |
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||||||||||| |||||| ||||||||||| |||||||||| |||||| |||||||| | ||| |||||||||||||||||||||| || |||||||| |
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| T |
44862079 |
aagaatataactatttcattctctgttcttggcattttctcgttctgtctaatgctgctgatttccttttcaggattaaaattcttcaccttgaatgact |
44862178 |
T |
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| Q |
118 |
acaccatccaattcctattttatttcatctatttaaacttacaaatttcaatggcatttctgttgtcttcctttttgtcagatgttaagaccgctgcagg |
217 |
Q |
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||| |||||||||| | ||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||| ||| |||||||||||||| |||| |
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| T |
44862179 |
acagcatccaattcgtgttttatttcatctatgtaaacttacaaatttcaacggcatttctgctgtcttcctttttttcaaatgttaagaccgctacagg |
44862278 |
T |
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| Q |
218 |
tttgtttctacttccagttgttcataataattagtgcattagtattttctt |
268 |
Q |
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||||||||||||| |||||||||||||||| ||| |||||||||||||| |
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| T |
44862279 |
tttgtttctacttgaagttgttcataataatgggtgtattagtattttctt |
44862329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 44848419 - 44848667
Alignment:
| Q |
18 |
aagaatataaccatttcactctctgttctttgcattttctcaccctgtctgatgctgctcacttcattttcaggattaaaattcttcagctcgaatgact |
117 |
Q |
| |
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|||||||||||||||| |||| |||||| |||||||| || || ||||| ||||| |||||||||||||||||||||||||||| || |||||||| |
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| T |
44848419 |
aagaatataaccatttaactcc--gttcttggcattttcccattctttctgacactgctgacttcattttcaggattaaaattcttcaccttgaatgact |
44848516 |
T |
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| Q |
118 |
acaccatccaattcctattttatttcatctatttaaacttacaaatttcaatggcatttctgttgtcttcctttttgtcagatgttaagaccgctgcagg |
217 |
Q |
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||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||| |
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| T |
44848517 |
acagcatccaattcatattttatttcatctatataaacttacaaatttcaatggcatttctgttgtcttccttttattcaaatgttaagactgctacagg |
44848616 |
T |
|
| Q |
218 |
tttgtttctacttccagttgttcataataattagtgcattagtattttctt |
268 |
Q |
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| ||| |||| || || ||||||||||||| ||| ||| |||||||||| |
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| T |
44848617 |
tatgtcgctacctcaagctgttcataataatgggtgtattggtattttctt |
44848667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 44836460 - 44836698
Alignment:
| Q |
30 |
atttcactctctgttctttgcattttctcaccctgtctgatgctgctcacttcattttcaggattaaaattcttcagctcgaatgactacaccatccaat |
129 |
Q |
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|||| ||||||| ||||| ||||| || ||| |||||| ||||||| || ||||||||||||||||||||||||| || ||||||||||| |||||||| |
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| T |
44836460 |
atttgactctctattcttggcattctcccactctgtctaatgctgccgacatcattttcaggattaaaattcttcaccttgaatgactacagcatccaat |
44836559 |
T |
|
| Q |
130 |
tcctattttatttcatctatttaaacttacaaatttcaatggcatttctgttgtcttcctttttgtcagatgttaagaccgctgcaggtttgtttctact |
229 |
Q |
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| | || |||||||||||| |||||||||||||||||| |||||||||| ||||||||||||| || |||||| ||||||| |||||||||||||||| |
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| T |
44836560 |
ttgtgttctatttcatctatataaacttacaaatttcaacggcatttctgctgtcttccttttttgcaaatgttaggaccgctacaggtttgtttctact |
44836659 |
T |
|
| Q |
230 |
tccagttgttcataataattagtgcattagtattttctt |
268 |
Q |
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| ||||||| ||| |||| ||| ||| |||||||||| |
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| T |
44836660 |
tgaagttgtttatagtaatgggtgtattggtattttctt |
44836698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 41 - 223
Target Start/End: Original strand, 44897415 - 44897597
Alignment:
| Q |
41 |
tgttctttgcattttctcaccctgtctgatgctgctcacttcattttcaggattaaaattcttcagctcgaatgactacaccatccaattcctattttat |
140 |
Q |
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||||||| ||||||||| |||||| |||||||| ||||||||||||||||| |||||||||| || ||||||||| | ||||||||| | |||||| |
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| T |
44897415 |
tgttcttggcattttcttgttctgtctaatgctgctgacttcattttcaggattgaaattcttcaccttgaatgactatagcatccaatttgtgttttat |
44897514 |
T |
|
| Q |
141 |
ttcatctatttaaacttacaaatttcaatggcatttctgttgtcttcctttttgtcagatgttaagaccgctgcaggtttgtt |
223 |
Q |
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| T |
44897515 |
tttatctatataaacttacaaatttcagtggcaattctgttggcttcctttttttcaaatgttaagactgctacaggtttgtt |
44897597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 12927343 - 12927250
Alignment:
| Q |
83 |
attttcaggattaaaattcttcagctcgaatgactacaccatccaattcctattttatttcatctatttaaacttacaaatttcaatggcattt |
176 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||| | ||||||||||||||| |||||||||||||||| |||||||| |
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| T |
12927343 |
attttcaggattaaaattcttcacaatgaatgactacagcatccaattcgtgttttatttcatctatataaacttacaaatttcgctggcattt |
12927250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 24031716 - 24031787
Alignment:
| Q |
96 |
aaattcttcagctcgaatgactacaccatccaattcctattttatttcatctatttaaacttacaaatttca |
167 |
Q |
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|||||||||| || ||||||||||| |||||||||| | ||||||||||| ||| ||||||||||||||||| |
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| T |
24031716 |
aaattcttcatcttgaatgactacaacatccaattcatcttttatttcatttatataaacttacaaatttca |
24031787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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