View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_low_38 (Length: 251)
Name: NF13789_low_38
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 98 - 243
Target Start/End: Complemental strand, 51011277 - 51011132
Alignment:
| Q |
98 |
aatgttttgaaggtatattatatttacctcaactttaaaaacatttgagacaagacccttatgactggttactgtggcatgcattacatccatgcctaaa |
197 |
Q |
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| T |
51011277 |
aatgttttgaaggtatattatatttacctcaactttaaaaacatttgagacaagacccttatgactggttactgtggcatgcattacatccatgcctaaa |
51011178 |
T |
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| Q |
198 |
gtgttgaaagcatccatcaatttcacaaaaccaccaggcctatgct |
243 |
Q |
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| T |
51011177 |
gtgttgaaagcatccatcaatttcacaaaaccaccaggcctatgct |
51011132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 51011431 - 51011379
Alignment:
| Q |
1 |
agtatcattattatcacatcatactttgaattgatttgatgtagtctaacaaattcat |
58 |
Q |
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| T |
51011431 |
agtatcattattatcacatcatact-----ttgatttgatgtagtctaacaaattcat |
51011379 |
T |
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