View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_low_41 (Length: 219)
Name: NF13789_low_41
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 41039018 - 41038835
Alignment:
| Q |
19 |
actggaggtgttgacgtgtcacatttgacattgtgacttgtcaaagttgatgtcatgacacacgaaacatgtcatagtaaaaatacttttacatataaac |
118 |
Q |
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| T |
41039018 |
actggaggtgttgatgtgtcacatttgacattgtgacttgtcaaagttgatgtcatgacacacgaaacatgtcatagtaaaaatacttttacatataaac |
41038919 |
T |
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| Q |
119 |
aacgttactcatttaattcgctatgccactaccaaatgcaaacaacctttctcatttccttctgtgtacgatatcaatactttc |
202 |
Q |
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| T |
41038918 |
aacgttactcatttacttcgctatgccactaccaaatgcaaacaacctttctcatttccttctgtgtacgatatcaatactttc |
41038835 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 26447035 - 26446998
Alignment:
| Q |
144 |
ccactaccaaatgcaaacaacctttctcatttccttct |
181 |
Q |
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| T |
26447035 |
ccactaccaaatgcatacaacgtttctcatttccttct |
26446998 |
T |
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