View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13789_low_45 (Length: 210)
Name: NF13789_low_45
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_low_45 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 20909631 - 20909440
Alignment:
| Q |
18 |
gattccaaaatatcatgtttgctcctatgcacaataagaatttcactaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaaa |
117 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20909631 |
gattccaaaacatcatatttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaaa |
20909532 |
T |
|
| Q |
118 |
gggaaatggcactctgaagcagcaattagccaacatgctggtgtttgcatatagttttagttcatttctaagtgttatcttactattgcttc |
209 |
Q |
| |
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| ||||||| |||||||||||| |||||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| |
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| T |
20909531 |
gagaaatggaactctgaagcaggaattagcctacacattggtgtttgcatatatttttagttcatttgtaagtgttatcttgctattgcttc |
20909440 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 20924079 - 20923888
Alignment:
| Q |
18 |
gattccaaaatatcatgtttgctcctatgcacaataagaatttcactaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaaa |
117 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20924079 |
gattccaaaacatcatatttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaaa |
20923980 |
T |
|
| Q |
118 |
gggaaatggcactctgaagcagcaattagccaacatgctggtgtttgcatatagttttagttcatttctaagtgttatcttactattgcttc |
209 |
Q |
| |
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| ||||||| |||||||||||| |||||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| |
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| T |
20923979 |
gagaaatggaactctgaagcaggaattagcctacacattggtgtttgcatatatttttagttcatttgtaagtgttatcttgctattgcttc |
20923888 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 27445364 - 27445556
Alignment:
| Q |
18 |
gattccaaaatatcatgtttgctcctatgcacaataagaatttcactaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |
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| T |
27445364 |
gattccaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttgctagataattatcaactagctcatgtagttctgcatttaaaa |
27445463 |
T |
|
| Q |
118 |
gggaa-atggcactctgaagcagcaattagccaacatgctggtgtttgcatatagttttagttcatttctaagtgttatcttactattgcttc |
209 |
Q |
| |
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| || | |||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
27445464 |
agtaatagggcattctgaagcagcaattagccaacatactggtgtttgcatatatttttagttcatttgtaagtgttatcttactattgcttc |
27445556 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 35324 - 35132
Alignment:
| Q |
18 |
gattccaaaatatcatgtttgctcctatgcacaataagaatttcactaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |
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|
| T |
35324 |
gattccaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttgctagataattatcaactaactcatgtatttctgcatttaaaa |
35225 |
T |
|
| Q |
118 |
gggaa-atggcactctgaagcagcaattagccaacatgctggtgtttgcatatagttttagttcatttctaagtgttatcttactattgcttc |
209 |
Q |
| |
|
| || | ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
35224 |
agtaatagggcactctgaagcagcaattagccaacatactggtgtttgcatatatttttagttcatttgtaagtgttatcttactattgcttc |
35132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 41994 - 41802
Alignment:
| Q |
18 |
gattccaaaatatcatgtttgctcctatgcacaataagaatttcactaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |
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| T |
41994 |
gattccaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttgctagataattatcaactagctcatgtagttctgcatttaaaa |
41895 |
T |
|
| Q |
118 |
gggaa-atggcactctgaagcagcaattagccaacatgctggtgtttgcatatagttttagttcatttctaagtgttatcttactattgcttc |
209 |
Q |
| |
|
| || | |||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
41894 |
agtaatagggcattctgaagcagcaattagccaacatactggtgtttgcatatatttttagttcatttgtaagtgttatcttactattgcttc |
41802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 42312745 - 42312554
Alignment:
| Q |
18 |
gattccaaaatatcatgtttgctcctatgcacaataagaatttcactaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaaa |
117 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42312745 |
gattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaaa |
42312646 |
T |
|
| Q |
118 |
gggaaatggcactctgaagcagcaattagccaacatgctggtgtttgcatatagttttagttcatttctaagtgttatcttactattgcttc |
209 |
Q |
| |
|
| ||||||| ||| |||||||| |||||||| ||| |||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
42312645 |
gagaaatggaactatgaagcagaaattagcctacacattggtgtttgcgtatatttttagttcatttgtaagtgttatcttactattgcttc |
42312554 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 8333302 - 8333338
Alignment:
| Q |
117 |
agggaaatggcactctgaagcagcaattagccaacat |
153 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8333302 |
agggaaagggcactctgaagcagcaattagccaacat |
8333338 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 36 - 209
Target Start/End: Complemental strand, 41326511 - 41326338
Alignment:
| Q |
36 |
ttgctcctatgcacaataagaatttcactaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaaagggaaatggcactctgaa |
135 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
41326511 |
ttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaaagagaaatggaactctgaa |
41326412 |
T |
|
| Q |
136 |
gcagcaattagccaacatgctggtgtttgcatatagttttagttcatttctaagtgttatcttactattgcttc |
209 |
Q |
| |
|
| || |||| || | | |||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41326411 |
gtaggaatttccctatacattggtgtttgcgtatatttttagttcatttgtaagtgttatcttactattgcttc |
41326338 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 11504729 - 11504856
Alignment:
| Q |
18 |
gattccaaaatatcatgtttgctcctatgcacaataagaatttcactaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaaa |
117 |
Q |
| |
|
||||| |||| || |||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||| |
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|
| T |
11504729 |
gattctaaaacattatgtttactcctatgcacaataagaatttcaccaattgaatttggtagataattatcaactaactcatgtagtttttcatttaaaa |
11504828 |
T |
|
| Q |
118 |
gggaaatggcactctgaagcagcaatta |
145 |
Q |
| |
|
||||||||||||||| |||||||||||| |
|
|
| T |
11504829 |
gggaaatggcactctaaagcagcaatta |
11504856 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 50717624 - 50717729
Alignment:
| Q |
99 |
tgtagttttgcatttaaaagggaaatggcactctgaagcagcaattagccaacatgctggtgtttgcatatagttttagttcatttctaagtgttatctt |
198 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| | ||| || ||||| |||||||| |||||||||||||| ||||||||| ||| ||||||||||||| |
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|
| T |
50717624 |
tgtagttatgcatttaaaatggaaagggcacaccgaatcatcaattcgccaacatattggtgtttgcatatttttttagttc-tttgtaagtgttatctt |
50717722 |
T |
|
| Q |
199 |
actattg |
205 |
Q |
| |
|
| ||||| |
|
|
| T |
50717723 |
attattg |
50717729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 50795224 - 50795119
Alignment:
| Q |
99 |
tgtagttttgcatttaaaagggaaatggcactctgaagcagcaattagccaacatgctggtgtttgcatatagttttagttcatttctaagtgttatctt |
198 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| | ||| || ||||| |||||||| |||||||||||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
50795224 |
tgtagttatgcatttaaaatggaaagggcacaccgaatcatcaattcgccaacatattggtgtttgcatatttttttagttc-tttgtaagtgttatctt |
50795126 |
T |
|
| Q |
199 |
actattg |
205 |
Q |
| |
|
| ||||| |
|
|
| T |
50795125 |
attattg |
50795119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 11909985 - 11909949
Alignment:
| Q |
117 |
agggaaatggcactctgaagcagcaattagccaacat |
153 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11909985 |
agggaaagggcactctgaagcagcaattagccaacat |
11909949 |
T |
|
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