View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_low_46 (Length: 206)
Name: NF13789_low_46
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 31648224 - 31648410
Alignment:
| Q |
1 |
ctgactaggaacttttgtctatatacttccaaatgggaacagtttttaaatttgcaagtaggaaggttatcaagttgaataaaaggccatatccctcttt |
100 |
Q |
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| T |
31648224 |
ctgactaggaacttttgtctatatacttccaaatgggaacagtttttaaatttgcaagtaggaaggttaacaagttgaataaaaggccatatccctcctt |
31648323 |
T |
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| Q |
101 |
ttcctcttcatatccattaataccttatttagcctagctaattactagttatagaaggtgttaattaatttacactaccaaaaatat |
187 |
Q |
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| T |
31648324 |
ttcctcttcatatccattaataccttatttagcctagctagttactagttatagaaggtgttaattaatttacactaccaaaaatat |
31648410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 31655254 - 31655360
Alignment:
| Q |
9 |
gaacttttgtctatatacttccaaatgggaacagtttttaaatttgcaagtaggaaggttatcaagttgaataaaaggccatatccctctttttc-ctct |
107 |
Q |
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||||||||||||| ||||| |||||||||| || |||||||||||||||||||||| || |||||||||||||||| | | |||||||||| |||| |
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| T |
31655254 |
gaacttttgtctaaatact-ccaaatgggatcaaattttaaatttgcaagtaggaag--taccaagttgaataaaaggtcgtgcacctctttttctctct |
31655350 |
T |
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| Q |
108 |
tcatatccat |
117 |
Q |
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|||||||||| |
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| T |
31655351 |
tcatatccat |
31655360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 31663195 - 31663155
Alignment:
| Q |
145 |
ctagttatag-aaggtgttaattaatttacactaccaaaaa |
184 |
Q |
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| T |
31663195 |
ctagttatagcaaagtgttaattaatttacactaccaaaaa |
31663155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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