View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_low_8 (Length: 547)
Name: NF13789_low_8
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 186 - 464
Target Start/End: Complemental strand, 15756953 - 15756676
Alignment:
| Q |
186 |
agacgaattaatgaaaatatgagtttgatgaattttt--gagtgataaattgttggcaaattaggaatttggtgtcgagtgagatgaagattaaa-aagg |
282 |
Q |
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| T |
15756953 |
agacaaattaatgtaaatatgagtttgattaatttttatgagtgatgaattgttggcaaattagaaatttggtgttga---agatgaagattaaagaagg |
15756857 |
T |
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| Q |
283 |
gcatacattttagggtttgatgttttaattaaaatattttatgtctacaaaatatgagnnnnnnnttaaacaattatattttgatataatgcaannnnnn |
382 |
Q |
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| T |
15756856 |
gaatactttttagggtttgatgttttaattaaaatattttatgtctataaaatatgag-aaaaagttaaacaattatattttgatataatgcaatttttt |
15756758 |
T |
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| Q |
383 |
naattgtaaaaatgagtaaaatgttacttaaccaatatatgtaagccacatcgtaaaaaatgtg-ccaaatcatcaaaaaagt |
464 |
Q |
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| T |
15756757 |
t-attgtaaaaatgagtcaaatgttacttaaccaatatatgtacgccacatcatcaaaaatgtgcccaaatcatcaagaaagt |
15756676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 15758270 - 15758159
Alignment:
| Q |
9 |
aggctaggaataatatatgattacagtacgtacgtagtatgtaaatactgaaacagaacgtatcagcaagaaatggcgagaaacgagaacagatggaagg |
108 |
Q |
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| T |
15758270 |
aggctaggaataatatatgattacagtacgta----gtatgtaaatactgaaacagaacgtatcaacaggaaatggcgagaaacgaaaacatatcggagg |
15758175 |
T |
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| Q |
109 |
aaacatgaatttgttg |
124 |
Q |
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| T |
15758174 |
aaacatgaatttgttg |
15758159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 401 - 481
Target Start/End: Complemental strand, 15756624 - 15756544
Alignment:
| Q |
401 |
aaatgttacttaaccaatatatgtaagccacatcgtaaaaaatgtgccaaatcatcaaaaaagtagcttccatggtatttt |
481 |
Q |
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| T |
15756624 |
aaatgttacttaaccaatatatgtacgccacatcgtaaaaaatgtgccaaatcatcaaaaaagtaactccaatggtatttt |
15756544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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