View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13789_low_9 (Length: 542)
Name: NF13789_low_9
Description: NF13789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13789_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 11 - 453
Target Start/End: Complemental strand, 7528493 - 7528044
Alignment:
| Q |
11 |
tccaagaaaataagatctaatcaaaacaaagaccttaattgagcagaattattcatcaatggttaacaacatcaagctcaaaagctaacaacatcaatcc |
110 |
Q |
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| T |
7528493 |
tccaagaaaataagatctaatcaaaacaaagaccttaattgagcagaataattcatcaatggttaacaacatcaagctcaaaagctaacaacatcaatcc |
7528394 |
T |
|
| Q |
111 |
caaaataagtttaacatatcaatctcaaaacctaacaacatcaagctcagaagttttaacacatcaagctaaaaccctaacaaaatcagttcaacaaata |
210 |
Q |
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| T |
7528393 |
caaaataagtttaacatatcaatctcaaaacctaacaacatcaagctcagaag-tttaacacatcaagctaaaaccctaactaaatcagttcaacaaata |
7528295 |
T |
|
| Q |
211 |
agatccagttaacaaagcccta--ctcgatgaaaccaatctaatagaaaagcaacaaatcataaccaatatatttggttctgatttattagatcttacat |
308 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7528294 |
agatccagttaacaaagccctacgctcgatgaaaccaatctaatagaaaagcaacaaatcataaccaatatatttggtactgatttattagatcttacat |
7528195 |
T |
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| Q |
309 |
gggtaagctgattttgaacttgatgttgatacac------agttcaacaatacgttaacaattgacaaaatcaatcttaaaatcagcttaaccaattaag |
402 |
Q |
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| T |
7528194 |
ggttaagctgattttgaacttgatgttgatacacatcaatagttcaacaatacgttaataattgacaaaatcaatcttaaaatcagcttaaccaattaag |
7528095 |
T |
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| Q |
403 |
atctaaacaaacagattaaccaaatcatcaagttcaaaatcagcttaacca |
453 |
Q |
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| T |
7528094 |
atctaaacaaacagattaaccaaatcatcaagttcaaaatcagcttaacca |
7528044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 418 - 528
Target Start/End: Complemental strand, 7528050 - 7527941
Alignment:
| Q |
418 |
ttaaccaaatcatcaagttcaaaatcagcttaaccaggtctttcaagaagnnnnnnntcagctttaccagttaagatctaatcaaacagattaaccaaat |
517 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7528050 |
ttaaccaaatcatcaagttcaaaatcagcttaaccagtttattcaagaa-aaaaaaatcagctttaccagttaagatctaatcaaacagattaaccaaat |
7527952 |
T |
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| Q |
518 |
catcatgttca |
528 |
Q |
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| T |
7527951 |
catcatgttca |
7527941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 7527998 - 7527928
Alignment:
| Q |
381 |
aaaatcagcttaaccaattaagatctaaacaaacagattaaccaaatcatcaagttcaaaatcagcttaac |
451 |
Q |
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||||||||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7527998 |
aaaatcagctttaccagttaagatctaatcaaacagattaaccaaatcatcatgttcaaaatcagcttaac |
7527928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 475 - 528
Target Start/End: Complemental strand, 7528112 - 7528059
Alignment:
| Q |
475 |
tcagctttaccagttaagatctaatcaaacagattaaccaaatcatcatgttca |
528 |
Q |
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||||||| |||| ||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
7528112 |
tcagcttaaccaattaagatctaaacaaacagattaaccaaatcatcaagttca |
7528059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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