View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1378_high_4 (Length: 501)
Name: NF1378_high_4
Description: NF1378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1378_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 34 - 262
Target Start/End: Complemental strand, 1416715 - 1416485
Alignment:
| Q |
34 |
gcatatttggagtgtataagaaatattttcctaaatgatgattagtgcacatcatgcatgcacacaaatttcattaattaaaccgctaggattaagtgaa |
133 |
Q |
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| T |
1416715 |
gcatatttggagtgtataagaaatattttcctaaatgatgattagtgcacatcatgcatgcacacaaatttcattaattaaaccgctaggattaagtgaa |
1416616 |
T |
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| Q |
134 |
agaagttgggtgttttgggaacatttatgta--cacataggacaaaggaaaggaaagaggggaccctatagtgtgctctattgtcaaaactatactaatt |
231 |
Q |
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| T |
1416615 |
agaagttgggtgttttgggaacatttatgtacacacataggacaaaggaaaggaaagaggggaccctatagtgtgctctattgtcaaaactatactaatt |
1416516 |
T |
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| Q |
232 |
atatccactagagatatacatataacatata |
262 |
Q |
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| T |
1416515 |
atatccactagagatatacatataacatata |
1416485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 346 - 490
Target Start/End: Complemental strand, 1416360 - 1416214
Alignment:
| Q |
346 |
gaaagtaaacatcttgatcattcctttcttcagttttagctgaagagatnnnnnnnnnnnnnnnnnnn--agttgtgaggaataattatttagttttgtt |
443 |
Q |
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| T |
1416360 |
gaaagtaaacatcttgatcattcctttcttcagttttagctgaagagattctctctctctatctctctctagttgtgaggaatatttatttagttttgtt |
1416261 |
T |
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| Q |
444 |
gactaccgacacccttatttttcccaaaaaagacattctaccttcat |
490 |
Q |
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| T |
1416260 |
gactaccgacacccttatttttcccaaaaaagacattctaccttcat |
1416214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 1416438 - 1416381
Alignment:
| Q |
264 |
ctgaaaataagcccaatgctcagtctgtaccatcaatcttcactatagctgaagagat |
321 |
Q |
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| T |
1416438 |
ctgaaaataagcccaatgctcagtctgtaccatcaatcttcactatagctgaagagat |
1416381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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