View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1378_high_5 (Length: 407)
Name: NF1378_high_5
Description: NF1378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1378_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 141 - 389
Target Start/End: Original strand, 35949317 - 35949564
Alignment:
| Q |
141 |
gttttatcaaatacacccacggtttgtttacctttacctacagattttttcgatcactatatgaagnnnnnnnnnttgtaatgatgt--atagctaatat |
238 |
Q |
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| T |
35949317 |
gttttatcacatacacccacggtttgtttacctttacctacagattttttctatcactatatgaagaaaaaaaa-ttgtaatgatgtgtatagctaatat |
35949415 |
T |
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| Q |
239 |
gttgctttccgtttgagagaagtttgtacaacacattatttgtgtttgaaaaatattatttactcgttttagctaatcttatgatatacgtatttcaata |
338 |
Q |
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| T |
35949416 |
gttgctttccttttgaga--agtttgtacaacacattatttgtgtttgaaaaatattatttactcgtttaagctaatctgatgatataagtatttcaata |
35949513 |
T |
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| Q |
339 |
attgtatgaaaataacctatgatatataagatgagaaagaagttatctccc |
389 |
Q |
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| T |
35949514 |
attgtatgaaaataacctatgatatatatgttgagaaagaagttctctccc |
35949564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 35949237 - 35949273
Alignment:
| Q |
60 |
gtggtatatacataaataattggaaacttttattatt |
96 |
Q |
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| T |
35949237 |
gtggtatatacatagataattggaaacttttattatt |
35949273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 31592878 - 31592824
Alignment:
| Q |
7 |
caagtttcttctataattttacatttggttctttatgccttttgcatcggtctgt |
61 |
Q |
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| T |
31592878 |
caagtttcttctataatttcacatttggttctttatgccttttgcatcggtctgt |
31592824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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