View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1378_low_10 (Length: 355)

Name: NF1378_low_10
Description: NF1378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1378_low_10
NF1378_low_10
[»] chr3 (5 HSPs)
chr3 (7-256)||(23925047-23925296)
chr3 (154-237)||(37611601-37611689)
chr3 (154-237)||(188483-188571)
chr3 (297-341)||(23926320-23926364)
chr3 (236-275)||(52246578-52246617)
[»] chr4 (3 HSPs)
chr4 (40-183)||(56540590-56540733)
chr4 (154-237)||(16895713-16895800)
chr4 (230-275)||(32217035-32217080)
[»] scaffold0103 (1 HSPs)
scaffold0103 (40-183)||(11787-11929)
[»] chr6 (9 HSPs)
chr6 (40-183)||(2625853-2625995)
chr6 (40-183)||(22976760-22976898)
chr6 (40-183)||(23811504-23811642)
chr6 (154-237)||(11272516-11272604)
chr6 (154-237)||(11470978-11471066)
chr6 (154-237)||(18389359-18389447)
chr6 (297-341)||(20414424-20414468)
chr6 (297-340)||(24964705-24964748)
chr6 (235-275)||(34712277-34712317)
[»] chr7 (3 HSPs)
chr7 (154-237)||(12960354-12960442)
chr7 (230-275)||(47118115-47118160)
chr7 (235-275)||(34606256-34606296)
[»] chr1 (3 HSPs)
chr1 (154-237)||(26429328-26429416)
chr1 (154-237)||(3929955-3930043)
chr1 (162-237)||(20767311-20767391)
[»] chr8 (1 HSPs)
chr8 (297-341)||(22240209-22240253)
[»] chr5 (2 HSPs)
chr5 (297-340)||(27362151-27362194)
chr5 (163-237)||(36366331-36366410)
[»] chr2 (2 HSPs)
chr2 (297-340)||(32264853-32264896)
chr2 (154-237)||(7364542-7364630)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 7 - 256
Target Start/End: Original strand, 23925047 - 23925296
Alignment:
Q  7 cttacttccatcatgttatcaatttctttgttctaatataggttactaaatccttttatggattgcaaaaaaccttcatacaaattgttatcaacttttt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23925047 cttacttccatcatgttatcaatttctttgttctaatataggttactaaatccttttatggactgcaaaaaaccttcatacaaattgttatcaacttttt 23925146  T
Q  107 aatgagttaatacactttattttggtccaaaatagattgcttattgtatcacatctaatcaaatctcaacttctatatgtgataaacggtttaaaaaata 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  23925147 aatgagttaatacactttattttggtccaaaatagattgcttattgtatcacatctgatcaaatctcaacttctataggtgataaacggtttaaaaaata 23925246  T
Q  207 gaaagtaactcaatgaagttcaaatttatttttgggaaatgctaactggt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23925247 gaaagtaactcaatgaagttcaaatttatttttgggaaatgctaactggt 23925296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 37611689 - 37611601
Alignment:
Q  154 atcacatctaatcaaatctcaacttctatatgtgataa-----acggtttaaaaaatagaaagtaactcaatgaagttcaaatttattt 237  Q
    |||| ||||||||||||||||||||||||| |||||||     || ||||||||||||||||| ||||| |||||||||||||||||||    
T  37611689 atcatatctaatcaaatctcaacttctataggtgataagtgaaactgtttaaaaaatagaaagaaactcgatgaagttcaaatttattt 37611601  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 188483 - 188571
Alignment:
Q  154 atcacatctaatcaaatctcaacttctatatgtgataa-----acggtttaaaaaatagaaagtaactcaatgaagttcaaatttattt 237  Q
    |||| |||| |||||||||||||||||||| |||||||     || ||||||||||||||||| ||||| |||||||||||||||||||    
T  188483 atcatatcttatcaaatctcaacttctataggtgataagtgaaactgtttaaaaaatagaaagaaactcgatgaagttcaaatttattt 188571  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 23926320 - 23926364
Alignment:
Q  297 atgtggttaattcttttacttgattagataatttatcaatgttat 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23926320 atgtggttaattcttttacttgattagataatttatcaatgttat 23926364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 52246578 - 52246617
Alignment:
Q  236 ttttgggaaatgctaactggtgcctgcggggcactcgtta 275  Q
    ||||||||||||||||||||||||| ||||||||| ||||    
T  52246578 ttttgggaaatgctaactggtgcctccggggcactggtta 52246617  T

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Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 56540590 - 56540733
Alignment:
Q  40 taatataggttactaaatccttttatggattgcaaaaaaccttcatacaaattgttatcaactttttaatgagttaatacactttattttggtccaaaat 139  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| || ||||||    
T  56540590 taatataggttactaaatccttttatggattgcaagaaaccttcatacaaattgttatcagctttttaatgagttaatacaccttatttttgttcaaaat 56540689  T
Q  140 agattgcttattgtatcacatctaatcaaatctcaacttctata 183  Q
    || |||||||||||||||||||||||||||||||||||| ||||    
T  56540690 aggttgcttattgtatcacatctaatcaaatctcaacttttata 56540733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 16895713 - 16895800
Alignment:
Q  154 atcacatctaatcaaatctcaacttctatatgtgataaacg----gtttaaaaaatagaaagtaactcaatgaagttcaaatttattt 237  Q
    |||| ||||||||||||||||||||||||| |||||||  |    |||||||||||| |||| |||||||||||||||||||||||||    
T  16895713 atcatatctaatcaaatctcaacttctataggtgataagtgaaatgtttaaaaaataaaaagaaactcaatgaagttcaaatttattt 16895800  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 32217035 - 32217080
Alignment:
Q  230 atttatttttgggaaatgctaactggtgcctgcggggcactcgtta 275  Q
    |||||||| |||||||||||||||||||||  ||||||||| ||||    
T  32217035 atttatttatgggaaatgctaactggtgcccccggggcactggtta 32217080  T

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Target: scaffold0103 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 11787 - 11929
Alignment:
Q  40 taatataggttactaaatccttttatgga-ttgcaaaaaaccttcatacaaattgttatcaactttttaatgagttaatacactttattttggtccaaaa 138  Q
    ||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| ||||||||||  ||||||||| |||||||||| |||||    
T  11787 taatataggttactaaatccttttatgaaattgcaagaaaccttcatacaaattgttatcagctttttaatg-tttaatacaccttattttggttcaaaa 11885  T
Q  139 tagattgcttattgtatcacatctaatcaaatctcaacttctata 183  Q
    ||| |||| |||| |||||||||||||||||||||||||| ||||    
T  11886 taggttgc-tattctatcacatctaatcaaatctcaacttttata 11929  T

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Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 40 - 183
Target Start/End: Complemental strand, 2625995 - 2625853
Alignment:
Q  40 taatataggttactaaatccttttatgga-ttgcaaaaaaccttcatacaaattgttatcaactttttaatgagttaatacactttattttggtccaaaa 138  Q
    ||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| ||||||||||  ||||||||| |||||||||| |||||    
T  2625995 taatataggttactaaatccttttatgaaattgcaagaaaccttcatacaaattgttatcagctttttaatg-tttaatacaccttattttggttcaaaa 2625897  T
Q  139 tagattgcttattgtatcacatctaatcaaatctcaacttctata 183  Q
    |||||||| |||| ||||||||||||| |||||||||||| ||||    
T  2625896 tagattgc-tattctatcacatctaattaaatctcaacttttata 2625853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 40 - 183
Target Start/End: Complemental strand, 22976898 - 22976760
Alignment:
Q  40 taatataggttactaaatccttttatgga-ttgcaaaaaaccttcatacaaattgttatcaactttttaatgagttaatacactttattttggtccaaaa 138  Q
    ||||||||||||||||||||||||||| | |||    |||||||||||| ||||||||||| ||||||||||  ||||||||| |||||||||| |||||    
T  22976898 taatataggttactaaatccttttatgaaattg----aaaccttcatacgaattgttatcagctttttaatgt-ttaatacaccttattttggttcaaaa 22976804  T
Q  139 tagattgcttattgtatcacatctaatcaaatctcaacttctata 183  Q
    ||| ||||| ||| |||||||||||||||||||||||||| ||||    
T  22976803 taggttgct-attctatcacatctaatcaaatctcaacttttata 22976760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 23811504 - 23811642
Alignment:
Q  40 taatataggttactaaatccttttatgga-ttgcaaaaaaccttcatacaaattgttatcaactttttaatgagttaatacactttattttggtccaaaa 138  Q
    ||||||||||||||||||||||||||| | |||    |||||||||||| ||||||||||| ||||||||||  ||||||||| |||||||||| |||||    
T  23811504 taatataggttactaaatccttttatgaaattg----aaaccttcatacgaattgttatcagctttttaatgt-ttaatacaccttattttggttcaaaa 23811598  T
Q  139 tagattgcttattgtatcacatctaatcaaatctcaacttctata 183  Q
    ||| ||||| ||| |||||||||||||||||||||||||| ||||    
T  23811599 taggttgct-attctatcacatctaatcaaatctcaacttttata 23811642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 11272516 - 11272604
Alignment:
Q  154 atcacatctaatcaaatctcaacttctatatgtgataa-----acggtttaaaaaatagaaagtaactcaatgaagttcaaatttattt 237  Q
    |||| ||||||||||||||| ||||||||| |||||||     || ||||||||||||||||| ||||| |||||||||||||||||||    
T  11272516 atcatatctaatcaaatctccacttctataggtgataagtgaaactgtttaaaaaatagaaagaaactcgatgaagttcaaatttattt 11272604  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 11471066 - 11470978
Alignment:
Q  154 atcacatctaatcaaatctcaacttctatatgtgataa-----acggtttaaaaaatagaaagtaactcaatgaagttcaaatttattt 237  Q
    |||| |||||||||||||||||||||||||  ||||||     ||  |||||||||||||||| || ||||||||||||||||||||||    
T  11471066 atcatatctaatcaaatctcaacttctatagatgataagtgagactatttaaaaaatagaaagaaattcaatgaagttcaaatttattt 11470978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 18389447 - 18389359
Alignment:
Q  154 atcacatctaatcaaatctcaacttctatatgtgataa-----acggtttaaaaaatagaaagtaactcaatgaagttcaaatttattt 237  Q
    |||| |||||||||||| |||||||||||| |||||||     || ||||||||||||||||| || || |||||||||||||||||||    
T  18389447 atcatatctaatcaaatttcaacttctataggtgataagtgaaactgtttaaaaaatagaaagaaattcgatgaagttcaaatttattt 18389359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 20414468 - 20414424
Alignment:
Q  297 atgtggttaattcttttacttgattagataatttatcaatgttat 341  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  20414468 atgtggttaattcttttacttgattagataacttatcaatgttat 20414424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 24964748 - 24964705
Alignment:
Q  297 atgtggttaattcttttacttgattagataatttatcaatgtta 340  Q
    |||| |||||||||||||||||||||||||||| ||||||||||    
T  24964748 atgttgttaattcttttacttgattagataattcatcaatgtta 24964705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 34712317 - 34712277
Alignment:
Q  235 tttttgggaaatgctaactggtgcctgcggggcactcgtta 275  Q
    |||||||||||||||||| ||||||| ||||||||| ||||    
T  34712317 tttttgggaaatgctaaccggtgcctccggggcactggtta 34712277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 12960354 - 12960442
Alignment:
Q  154 atcacatctaatcaaatctcaacttctatatgtgataa-----acggtttaaaaaatagaaagtaactcaatgaagttcaaatttattt 237  Q
    |||| ||||||||||||||||||||||||| |||||||     || ||||||||||||||||| ||||| |||||||||||||||||||    
T  12960354 atcatatctaatcaaatctcaacttctataggtgataagtgaaactgtttaaaaaatagaaagaaactcgatgaagttcaaatttattt 12960442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 47118160 - 47118115
Alignment:
Q  230 atttatttttgggaaatgctaactggtgcctgcggggcactcgtta 275  Q
    ||||| ||||||||||||||||||||||||| ||||||||| ||||    
T  47118160 atttaattttgggaaatgctaactggtgcctccggggcactggtta 47118115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 34606256 - 34606296
Alignment:
Q  235 tttttgggaaatgctaactggtgcctgcggggcactcgtta 275  Q
    |||| ||||||||||||||||||||| ||||||||| ||||    
T  34606256 ttttggggaaatgctaactggtgcctccggggcactggtta 34606296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 26429416 - 26429328
Alignment:
Q  154 atcacatctaatcaaatctcaacttctatatgtgataa-----acggtttaaaaaatagaaagtaactcaatgaagttcaaatttattt 237  Q
    |||| ||||||||||||||||||||||||| |||||||     || ||||||||||||||||| ||||| |||||||||||||||||||    
T  26429416 atcatatctaatcaaatctcaacttctataggtgataagtgaaactgtttaaaaaatagaaagaaactcgatgaagttcaaatttattt 26429328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 3930043 - 3929955
Alignment:
Q  154 atcacatctaatcaaatctcaacttctatatgtgataa-----acggtttaaaaaatagaaagtaactcaatgaagttcaaatttattt 237  Q
    |||| ||||||||||||||||||||||||| |||||||     || ||||||||||||||||  ||||| |||||||||||||||||||    
T  3930043 atcatatctaatcaaatctcaacttctataggtgataagtgaaactgtttaaaaaatagaaaaaaactcgatgaagttcaaatttattt 3929955  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 20767311 - 20767391
Alignment:
Q  162 taatcaaatctcaacttctatatgtgataa-----acggtttaaaaaatagaaagtaactcaatgaagttcaaatttattt 237  Q
    |||||||||||||||||||||| |||||||     || |||||||||| |||||| ||||| | |||||||||||||||||    
T  20767311 taatcaaatctcaacttctataggtgataagtgaaactgtttaaaaaaaagaaagaaactcgacgaagttcaaatttattt 20767391  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 22240209 - 22240253
Alignment:
Q  297 atgtggttaattcttttacttgattagataatttatcaatgttat 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  22240209 atgtggttaattcttttacttgattagataatttatcaatgttat 22240253  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 27362194 - 27362151
Alignment:
Q  297 atgtggttaattcttttacttgattagataatttatcaatgtta 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27362194 atgtggttaattcttttacttgattagataatttatcaatgtta 27362151  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 36366410 - 36366331
Alignment:
Q  163 aatcaaatctcaacttctatatgtgataa-----acggtttaaaaaatagaaagtaactcaatgaagttcaaatttattt 237  Q
    ||||||||||||||||||||| |||||||     || ||||| ||||||||||| ||||| |||||||||||||||||||    
T  36366410 aatcaaatctcaacttctataggtgataagtgaaactgtttataaaatagaaagaaactcgatgaagttcaaatttattt 36366331  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 32264896 - 32264853
Alignment:
Q  297 atgtggttaattcttttacttgattagataatttatcaatgtta 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32264896 atgtggttaattcttttacttgattagataatttatcaatgtta 32264853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 7364542 - 7364630
Alignment:
Q  154 atcacatctaatcaaatctcaacttctatatgtgataa-----acggtttaaaaaatagaaagtaactcaatgaagttcaaatttattt 237  Q
    |||| |||||||||||| |||||||||||| |||||||     || ||||||||||||||||| || || |||||||||||||||||||    
T  7364542 atcatatctaatcaaatttcaacttctataggtgataagtgaaactgtttaaaaaatagaaagaaattcgatgaagttcaaatttattt 7364630  T

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