View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1378_low_12 (Length: 341)
Name: NF1378_low_12
Description: NF1378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1378_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 113 - 314
Target Start/End: Original strand, 2327611 - 2327815
Alignment:
| Q |
113 |
cagcggaatattatatgtagatttgtcacattggtaagattttgcttcatacaatgatccattgtgcatacatatgcttttactatcatagttgttcatt |
212 |
Q |
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| T |
2327611 |
cagcggaatattatatgtagatttgtcacattggtaagattttgcttcatacaacgatccattatgcatacatatgcttttactatcatagttgttcatt |
2327710 |
T |
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| Q |
213 |
tttatatatcttgtttatggtatagaataaaacgtgctagcataacataagttaatgta---gttataatattaaaacttgctttattttggtagactga |
309 |
Q |
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| T |
2327711 |
tttatatatcttgtttctggtatagaataaaacgtgctcgcataacataagttaatgtagttgttataatattaaaacttgctttattttggtagactga |
2327810 |
T |
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| Q |
310 |
cacag |
314 |
Q |
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|||| |
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| T |
2327811 |
tacag |
2327815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 2331351 - 2331446
Alignment:
| Q |
150 |
gattttgcttcatacaatgatccattgtgcatacatatgcttttactatcatagttgttcatttttatatatcttgtttatggtatagaataaaac |
245 |
Q |
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| T |
2331351 |
gattttgtttcatcaaatgatcacttatgcatacatattcctttactatcatagttgttcattcttacatatcttgtttcttatataaaataaaac |
2331446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 2294406 - 2294490
Alignment:
| Q |
104 |
ataacacagcagcggaatattatatgtagatttgtcacattggtaagattttgcttcatacaatgatccattgtgcatacatatgc |
189 |
Q |
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| T |
2294406 |
ataacacagcaggggagtattatatgtggatttgtcata-tggtgggattttgtttcatataatgatccgttatgcatatatatgc |
2294490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 2304214 - 2304275
Alignment:
| Q |
184 |
atatgcttttactatcatagttgttcatttttatatatcttgtttatggtatagaataaaac |
245 |
Q |
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| T |
2304214 |
atatgcctttaatatcataattgttcattcttatatatcttgtttcttgtataaaataaaac |
2304275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 2321718 - 2321798
Alignment:
| Q |
104 |
ataacacagcagcggaatattatatgtagatttgtcacattggtaagattttgcttcatacaatgatccattgtgcatacat |
185 |
Q |
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| T |
2321718 |
ataacacaacaggggaatattatatgtggatttctcatat-ggtcggattttgtttcatacaatgatcccttatgcatacat |
2321798 |
T |
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