View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1378_low_13 (Length: 324)
Name: NF1378_low_13
Description: NF1378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1378_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 6207394 - 6207257
Alignment:
| Q |
81 |
gtagattattctgcttacattctgtttgataaaaaatagctcattttgttagccgatggtagatgaatctatagcaaacaacggatagactatctgatta |
180 |
Q |
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| T |
6207394 |
gtagattagtctgcttacattctgtttgataaaaaatagctcattttgttagccgatggtagatgaatctatagcaaataacggatagactatctgatta |
6207295 |
T |
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| Q |
181 |
aaatatttaaagtgtttagtaaaattaatcgataaagt |
218 |
Q |
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| T |
6207294 |
aaatatttaaagtgtttagtaaaattaatcgataaagt |
6207257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 6215030 - 6214943
Alignment:
| Q |
128 |
gttagccgatggtagatgaatctatagcaaacaacggatagactatctgattaaaatatttaaagtgtttagtaaaattaatcgataaagt |
218 |
Q |
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| T |
6215030 |
gttagctgatggttgatgaacctataacaaataacggatagactatctgattaa---atttaaagtgttggataaaattaaacaataaagt |
6214943 |
T |
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