View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1378_low_14 (Length: 296)
Name: NF1378_low_14
Description: NF1378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1378_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 56 - 245
Target Start/End: Original strand, 5871639 - 5871828
Alignment:
| Q |
56 |
cacagacctaagtggatggtaaacaggctcattaacagaagagttaacagaagaaaccaaaacacaaacatgaaggattaagaaatacttcacctctgac |
155 |
Q |
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| T |
5871639 |
cacagacctaagtggatggcaaacaggctcattaacagaagagttaacagaagaaaccaaaacacaaacatgaaggattaagaaatacttcacttctgac |
5871738 |
T |
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| Q |
156 |
ttatgcccttccaaaattgtcacatcagactcaagaaattcacacggctgaaatgctgatgttgtacatatgtccatggtctctgctcct |
245 |
Q |
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| T |
5871739 |
ttatgcccttccaaaattgtcacatcagacttaagaaattcacacggctgaaatgctgatgttgtacatatgtccatgggctctggtcct |
5871828 |
T |
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Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 56 - 245
Target Start/End: Original strand, 5857964 - 5858154
Alignment:
| Q |
56 |
cacagacctaagtggatggtaaacaggctcattaacagaagagttaacagaagaaaccaaaacacaaacatgaaggattaa-gaaatacttcacctctga |
154 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| |||||||||| |
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| T |
5857964 |
cacatacctaagtggatggtaaacaggctcattaacagaagagttaacagaagaaaccaaaacacaaacatgaagcattgatgaaatacatcacctctga |
5858063 |
T |
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| Q |
155 |
cttatgcccttccaaaattgtcacatcagactcaagaaattcacacggctgaaatgctgatgttgtacatatgtccatggtctctgctcct |
245 |
Q |
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| T |
5858064 |
cttatgcccttccaaaattgtcacatctgacataagaaattcacatggctgagatgttgatgttgtacatatgtccatgggctctggtcct |
5858154 |
T |
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