View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1378_low_3 (Length: 729)

Name: NF1378_low_3
Description: NF1378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1378_low_3
NF1378_low_3
[»] chr5 (1 HSPs)
chr5 (77-720)||(10913686-10914329)


Alignment Details
Target: chr5 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 77 - 720
Target Start/End: Original strand, 10913686 - 10914329
Alignment:
Q  77 cacagacgcctgcaaatcaaaggcgtgaaatgccttttactgataggaactaaagattctgaacttccaatcatgtatannnnnnnnnaattctgaattg 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||| |||||    
T  10913686 cacagacgcctgcaaatcaaaggcgtgaaatgccttttactgataggaactaaagattctgaacttccaatcatgtatatttttttttaattctaaattg 10913785  T
Q  177 attggacaaagttccttagccttgagtcttatcaaatttatagagaatggcatgaatgtaaaataaataaaaaagtttcatcccaccatgcaatacataa 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||    
T  10913786 attggacaaagttccttagccttgagtcttatcaaatttatagagaatggcatgaatgtaaaataaataaaaaggtttcaaccccccatgcaatacataa 10913885  T
Q  277 aaagtgcagaggtaatatgtaaggtatgtaaagagaatcatacagaaacaatgtgttttacaaccaatatatccctggttgatgcccaagacgtgtatcc 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10913886 aaagtgcagaggtaatatgtaaggtatgtaaagagaatcatacagaaacaatgtgttttacaaccaatatatccctggttgatgcccaagacgtgtatcc 10913985  T
Q  377 ctaaataatcaatacaaaaagcttttcctgtatcaactttcaaaagaaaatattcatgtactcctatagtattcaaatcctttcctatctcctttcttca 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10913986 ctaaataatcaatacaaaaagcttttcctgtatcaactttcaaaagaaaatattcatgtactcctatagtattcaaatcctttcctatctcctttcttca 10914085  T
Q  477 ttcaccaaatactcctttccaaaattctctgtaatcaaaagctactataaaatttagttcattctctttgtcaaacttaaaatcatatatttaaattgaa 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10914086 ttcaccaaatactcctttccaaaattctctgtaatcaaaagctactataaaatttagttcattctctttgtcaaacttaaaatcatatatttaaattgaa 10914185  T
Q  577 acaacaaataaatcagctgtgaagaacccaagccatttgactcatttagttagattcatgaatgagtttgtttaaaagggtcgtcaacaaagcgtccctt 676  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10914186 acaacaaataaatcagctgtgaagaacccaagccatttgactcatttagttagattcatgaatgagtttgtttaaaagggtcgtcaacaaagcgtccctt 10914285  T
Q  677 ctctctgccctattctcttccctcagtctcctatgctcatctct 720  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  10914286 ctctctgccctattctcttccctcagtctcctatgctcttctct 10914329  T

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