View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1378_low_4 (Length: 533)
Name: NF1378_low_4
Description: NF1378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1378_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 138 - 518
Target Start/End: Complemental strand, 38959406 - 38959031
Alignment:
| Q |
138 |
acctttttaaacaggaggtttctcataaaaatcacatggattctaaaatcagttaaaaacgcttcgaatttttaaatctaacctcatggtagaggggtat |
237 |
Q |
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| T |
38959406 |
acctttctaaacgggaggtttctcataaaaatcacatgaattctaaaatcagttaaaaacgcttcgaatttttaaatctaacctcatggtagaggggtat |
38959307 |
T |
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| Q |
238 |
tttcgagatttcagaggcgcctgggatatattaagggtggaaaaagaatttcactgtattaaaacatgggatttgacacaaacacattgaacaaatataa |
337 |
Q |
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| T |
38959306 |
tttcgagatttcagaggcacctgagatatgttaagggtggaaaaagaatttcactgtattaaaacatgggatttgacacaaacacat--------tataa |
38959215 |
T |
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| Q |
338 |
gaaccaaaacg---taaaattattgctcatattcttaaaaccccctaagatcgtaagcaagtttttcgcatcataagagatgagtaagttgacatcaact |
434 |
Q |
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| T |
38959214 |
gaaccaaaacgtaataaaattattgctcatattcttaaaaccccctaagatcgtaagcaaatttttcgcattataagagatgagtaagttgacatcaact |
38959115 |
T |
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| Q |
435 |
tatcagaagaaattttccattggtacaataattagcaaaataaaggaaaaattcaaagcctaataattcttgtatgcaaaatat |
518 |
Q |
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| T |
38959114 |
tatcagaagagattttccattggtacaataattagcaaaataaaggaaaaattcaaagcctaataattcttgtatgcaaaatat |
38959031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 38959500 - 38959439
Alignment:
| Q |
65 |
tgaaccatggataaataataaattaacggtagttaaaccttttacctttctaaacggcaacc |
126 |
Q |
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| T |
38959500 |
tgaaccgtggataaataataaattaacggtggttaaaccttttacctttctaaacggcaacc |
38959439 |
T |
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