View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1378_low_5 (Length: 531)
Name: NF1378_low_5
Description: NF1378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1378_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 30 - 524
Target Start/End: Complemental strand, 7724660 - 7724170
Alignment:
| Q |
30 |
ataataccggtaatgatgttaggtttttacaatgaaaaagtgacctgagtttgcaggtatagtgcaacactaacttcattggatgattagattctacgct |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7724660 |
ataataccggtaatgatgttaggtttttacaatgaaaaagtgacctgagtttgcaggtatagtgcaacactaacttcattggatgattagattctacgct |
7724561 |
T |
|
| Q |
130 |
cggtattctaaaaaagacatttcagttttactgtttctgaaccccacagtgttcagttcagagacaacagtgattctaaacattggcattggatttggac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7724560 |
cggtattctaaaaaagacatttcagttttactgtttctgaaccccacagtgttcagttcagagacaacagtgattctaaacaatggcattggatttggac |
7724461 |
T |
|
| Q |
230 |
catcagatttgcttcaaaccaattaaatccaatccaccatcagtactgtacatacctatcagtattcgtgtatatgaacgtgtgtggtatggaattcagc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7724460 |
catcagatttgcttcaaaccaattaaatccaatccaccatcagtactgtacatacctatctgtattcgtgtatatgaacgtgtgtggtgtggaattcagc |
7724361 |
T |
|
| Q |
330 |
aaaaatatatataaataaaaacaacaaatatgtatagtatttcatgcacactatagacttgcaattgagatagtgtatatgcaagtctttgtnnnnnnnn |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7724360 |
aaaaatatatataaataaaaacaacaaatatgtatagtatttcatgcacactatagacttgcaattgagatagtgtatatgcaagtctttgtgaaaaaaa |
7724261 |
T |
|
| Q |
430 |
nnngaagtaggttgttatacatctaactgaaagagaaagttaattaaagtagtcgatnnnnnnnnnnnngacaaactaagaatatagaattatct |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7724260 |
----aagtaggttgttatacatctaactgaaagagaaagttaattaaagtagtcgataaaaaataaaaagacaaactaagaatatagaattatct |
7724170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University