View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379-INSERTION-1 (Length: 293)
Name: NF1379-INSERTION-1
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379-INSERTION-1 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 32669434 - 32669725
Alignment:
| Q |
8 |
gtaggcgctgctgaaatggggattgattgacttgtatttagtgatttgttttgtaggcaagttagtgaacataattcgtagctacataat-----ggcta |
102 |
Q |
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| T |
32669434 |
gtaggcgttgctgaaatggagattgattgacttgtatttagtgatttgttttgtaggcaagttagtgagcataattcgtagctacataatagaaaggcta |
32669533 |
T |
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| Q |
103 |
gc-tgatagagaatcttcctcatgattttatcatcatgttgttatgagataaacagaattgttgactatcaatgaatttattaggtgggtgaagtccgta |
201 |
Q |
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| T |
32669534 |
gcgtgatagagaatcttcctcataattttatcatcatgttgttatgagatatacagaattgttgactatcaatgaatttattacgtgggtgaagtccgta |
32669633 |
T |
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| Q |
202 |
tcaatttaaactttttgtaaacggtgtcatcgtgattgtatcttaaaatcctcgtctgtttcattccggattagctggagatgttccttgca |
293 |
Q |
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| T |
32669634 |
tcaatttagactttttgtaaacagtgccatcgtggttgtatcttaaaatcctcgtctgtttcattccggattagctggagatgttccttgca |
32669725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 23262962 - 23263094
Alignment:
| Q |
161 |
tgttgactatcaatgaatttattaggtgggtgaagtccgtatcaatttaaactttttgtaaacggtgtcatcgtgattgtatcttaaaatcctcgtctgt |
260 |
Q |
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| T |
23262962 |
tgttgactctcgatgaatttattaggtgggtgaagtgtgtatccatttaaactttttgcaaaaggtatcatcgtggttgtatctcaaaatcctcgtccgt |
23263061 |
T |
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| Q |
261 |
ttcattccggattagctggagatgttccttgca |
293 |
Q |
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| T |
23263062 |
tttattttggattagttgaagatgttccttgca |
23263094 |
T |
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