View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379-INSERTION-3 (Length: 502)
Name: NF1379-INSERTION-3
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379-INSERTION-3 |
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Alignment Details
Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 370
Target Start/End: Complemental strand, 39072234 - 39071884
Alignment:
| Q |
9 |
aagcatgttaatgttaatggttaaataggtatgttgctgtagacaccgttgcctctaattggatttcactttggttgttgttgtattgcagatgaattgg |
108 |
Q |
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| T |
39072234 |
aagcatgtcaatgttactgattaattaggtatgttgctgtagacaccgttacctctaattggatttccctttg----------tattgcagatgaattgg |
39072145 |
T |
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| Q |
109 |
gaatcaattgacaagactttcatgccactgttgttacaagaaaaatcccacagcttatgagattgctatctgtttaatggctttaaaaatttaatgtgga |
208 |
Q |
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| T |
39072144 |
aaactaattgacaggacttttatgccactgttgttacaagacaaatcccacag-ttatgaaattgctatctgtttcatggctttgaaaatgtaatgtgca |
39072046 |
T |
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| Q |
209 |
t--aggctttccatgttgaaagtctatgtttcatctgttagagacaacatgtctgtcgtggatctaatgaagttgnnnnnnngctataagtatttcctaa |
306 |
Q |
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| T |
39072045 |
tagaggcttcggatgttgaaagtgtatgtttcatccgttaagaatttcatgtcggtcgtggatctcatgaagttg--tttttggtttacgtattacataa |
39071948 |
T |
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| Q |
307 |
ttagctatattggaagactaatttatgaccccattaatgcattctgatttgtttcagtattaac |
370 |
Q |
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| T |
39071947 |
ttggctgtattggaagcctaatatatgacaccattaatccattatgatatgcttcaatattaac |
39071884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 403 - 449
Target Start/End: Complemental strand, 39071889 - 39071843
Alignment:
| Q |
403 |
attaactgcatctgtttactattactatgtgcatatcagagcaggtt |
449 |
Q |
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| T |
39071889 |
attaactgcatctgtttaatattactatgtgcatatcagagcaggtt |
39071843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 403 - 485
Target Start/End: Complemental strand, 44656769 - 44656686
Alignment:
| Q |
403 |
attaactgcatctgtttactattactatgtgcatatcagagcag-gtttattgggacctaagtgagcatgttttcatgtcaatg |
485 |
Q |
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| T |
44656769 |
attaagtgcatgtgtttactattacaatgtgcatatcagagcagattttattgggaccaaagtgagcatattttcatgtcaatg |
44656686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 40170226 - 40170175
Alignment:
| Q |
57 |
ttgcctctaattggatttcactttggttgttgttgtattgcagatgaattgg |
108 |
Q |
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| T |
40170226 |
ttgcctctaattgggttttgcttttgttgctgttgtattgcagatgaattgg |
40170175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 403 - 485
Target Start/End: Original strand, 4455787 - 4455870
Alignment:
| Q |
403 |
attaactgcatctgtttactattactatgtgcatatcagagcagg-tttattgggacctaagtgagcatgttttcatgtcaatg |
485 |
Q |
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| T |
4455787 |
attaaatgcatgtgtttactattacaatgtacatatcagagcaggttttattgggaccaaagtgagcatattttcatgtcaatg |
4455870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 403 - 481
Target Start/End: Original strand, 31446785 - 31446865
Alignment:
| Q |
403 |
attaactgcatctgtttactattactatgtgcatatcagagcag-gtttattggg-acctaagtgagcatgttttcatgtc |
481 |
Q |
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| T |
31446785 |
attaagtgcatgtgtttactattacaatgtgcatatcagagcagattttattgggcaccaaagtgagcatattttcatgtc |
31446865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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