View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379-INSERTION-6 (Length: 490)
Name: NF1379-INSERTION-6
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379-INSERTION-6 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 256 - 490
Target Start/End: Original strand, 32547936 - 32548173
Alignment:
| Q |
256 |
caccctgtttactacaatgtcatcatagaccatacaccaaggctcactaacaatctggattggttctaattctaaatcaaacatgtaaatgtgtcccccc |
355 |
Q |
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| T |
32547936 |
caccctgtttactacaatgccatcatagactatacaccaaggctcactaacaatctggattggttctaattctaaatcaaacatgtaaatgtgtcccccc |
32548035 |
T |
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| Q |
356 |
agaatgacaaatgagactatactgcaggagttattacttattacatctatctataagagaagcagactacaatttctgctaatgtatcaattgcag---a |
452 |
Q |
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| T |
32548036 |
agaatgacaaatgagactatactgcaggagttattacttattacatctatctataagagaagcagactacaatttctgctaatgtatcaattgcagacaa |
32548135 |
T |
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| Q |
453 |
caattttaactacaatgcaatcatcactatcctttcat |
490 |
Q |
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| T |
32548136 |
caattttaactacaatgcaatcatccctatcctttcat |
32548173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 32547739 - 32547926
Alignment:
| Q |
7 |
actttcagctatatatttaagtttcaattgtaactgtcgtgactttgcatgataaaacttgtgaatctcatcccaaacttgaggtgcatgaacacagcaa |
106 |
Q |
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| T |
32547739 |
actttcagctatagatttaagcttgaatcgtaactgtcgtgactttgcatgataaaacttgtgaatctcatcccaaacttgaggtgcatgaagacagcaa |
32547838 |
T |
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| Q |
107 |
acaacatgaggatcagcggaatttttggtacagacgacttgaaaacgtgaatatcattgaacatgatgc--aagatattagtgtctga |
192 |
Q |
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| T |
32547839 |
acaacatgaggatcagcggaatttgtggtacagacgacttgaaaacgtgaatataattgaacgtgatgcaaaagatattagtgtctga |
32547926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 32556913 - 32556994
Alignment:
| Q |
238 |
cctgcattttagcagagtcaccctgtttactacaatgtcatcatagaccatac-accaaggctcactaacaatctggattgg |
318 |
Q |
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| T |
32556913 |
cctgtatttcagcagagtcactctgtttactacaatgccatcatagactatacaacaaaggctagctaacaatctgtattgg |
32556994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 440
Target Start/End: Complemental strand, 32744430 - 32744385
Alignment:
| Q |
395 |
attacatctatctataagagaagcagactacaatttctgctaatgt |
440 |
Q |
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| T |
32744430 |
attacatctatctataagagaaatagactacagtttcagctaatgt |
32744385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 202 - 329
Target Start/End: Original strand, 9552760 - 9552887
Alignment:
| Q |
202 |
tatatatcaacttaacaatctatcttctgtctctaccctgcattttagcagagtcaccctgtttactacaatgtcatcatagaccatacaccaaggctca |
301 |
Q |
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| T |
9552760 |
tatatatcaacttaacaatttatcttttgcctcagccctgcattttagcagagtcaccctgtttactacaattccatcatagactataaaccaaggctca |
9552859 |
T |
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| Q |
302 |
ctaacaatctggattggttctaattcta |
329 |
Q |
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| T |
9552860 |
ctaacaatctggattagttctaattcta |
9552887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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