View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1379-INSERTION-7 (Length: 455)
Name: NF1379-INSERTION-7
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379-INSERTION-7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 5690000 - 5689805
Alignment:
| Q |
8 |
gttaagggtcaagtgaagttgcatcaaattgtttttccatccaagattttctatacattttatttgagaggtattaaggatttgccacaagagcttcttg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5690000 |
gttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtattaaggatttgccacaagagcttcttg |
5689901 |
T |
|
| Q |
108 |
gtaagcatgttgagccttctactgctgttgaagcttctcctgctgctaaggctcttgagcctcatgctgtcattgctggttttaccaattagttaa |
203 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5689900 |
gtaaacatgttgagccttctcctgctgttgaagcttctcctgctgctaaagctcttgagcctcatgctgtcattgctggttttacaaattagttaa |
5689805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 231 - 454
Target Start/End: Complemental strand, 5689776 - 5689552
Alignment:
| Q |
231 |
agtggagaaataataagtggtttgatg---gattttgtaatggagatttttctttttgcataatgcttggaatgagtagttgtttgaatatgacaaggnn |
327 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5689776 |
agtggagaaataataagtggtttgatgattgattttgtaatggagatttttctttttgcataatgcttggtatgagtagttgtttgaatatgacaaggaa |
5689677 |
T |
|
| Q |
328 |
nnnnnntgatgcaaaagtaccttatggttgtcatcattg-ttttggaccataaattaatatttcttttggaatttggaccatatatttatttttcagtaa |
426 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5689676 |
aaaaaatgatgcaaaagtaccatgtggttgtcatcattgaatttggaccataaattaatatttcagttggaatttggaccatatatttatttttcagtaa |
5689577 |
T |
|
| Q |
427 |
ttgcttccttcttttttcttctagtgta |
454 |
Q |
| |
|
||| | ||||||| |||||||||||| |
|
|
| T |
5689576 |
ttg---cattcttttctcttctagtgta |
5689552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 25914675 - 25914500
Alignment:
| Q |
17 |
caagtgaagttgcatcaaattgtttttccatccaagattttctatacattttatttgagaggtattaaggatttgccacaagagcttcttggtaagcatg |
116 |
Q |
| |
|
||||||||| | |||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
25914675 |
caagtgaagctcaatcaaattgtttttccatttaagattttctacacattttatttgaagggtattaaggatttgccacaagagcttcttggtaaaccag |
25914576 |
T |
|
| Q |
117 |
ttgagccttctactgctgttgaagcttctcctgctgctaaggctcttgagcctcatgctgtcattgctggttttac |
192 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||| |
|
|
| T |
25914575 |
ttgagcctaaccctaatgttgaagcttctcctgctgctaaagctcttgagccacatgctaccattgctggttttac |
25914500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 6792693 - 6792803
Alignment:
| Q |
14 |
ggtcaagtgaagttgcatcaaattgtttttccatccaagattttctatacattttatttgagaggtattaaggatttgccacaagagcttcttggtaagc |
113 |
Q |
| |
|
|||||||| ||| | ||||||||||| ||||||| ||||| || || ||||||||| | | |||||||||||||||||||| ||| |||||| ||| | |
|
|
| T |
6792693 |
ggtcaagttaagcttcatcaaattgtgtttccatttaagatattttacacattttatcttaagggtattaaggatttgccacatgagtttcttgttaatc |
6792792 |
T |
|
| Q |
114 |
atgttgagcct |
124 |
Q |
| |
|
| |||||||| |
|
|
| T |
6792793 |
ctattgagcct |
6792803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University