View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1379-INSERTION-9 (Length: 401)
Name: NF1379-INSERTION-9
Description: NF1379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1379-INSERTION-9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 401
Target Start/End: Original strand, 1434465 - 1434861
Alignment:
| Q |
8 |
atttaatcacttgagtgaagccacaattatgtacttttctatgatttatatttctactttaaaagttttgtgctgaattgaattttattttaaaattgtt |
107 |
Q |
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| T |
1434465 |
atttaatcacttgagtgaagccacaattatgtacttttctatgatttatatttctactttaaaagttttgtgctgaattgaattttattttaaaattgtt |
1434564 |
T |
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| Q |
108 |
gagattgtacggagacaaatatgttgatgtcttatctatttttcagaatcttctaggaaacatgaatcattttgataaaggtgaaattccaattctgtca |
207 |
Q |
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| T |
1434565 |
gagattgtacggagacaaatatgttgatgtcttatctatttttcagaatcttctaggaaacatgaatcattttgataaaggtgaaattccaattctgtca |
1434664 |
T |
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| Q |
208 |
gaa---acatgtgcacaacgatctaatgaacctcaggattctaccttctgaagaaacatatcgagcacaccaagtgcttcaatatcgaatcttgtcggac |
304 |
Q |
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| T |
1434665 |
gaaagtacatgtgcacaacgatctaatgaacctcaggattctaccttccgaagaaacatatcaagcacaccaagtgcttcaatatcgaatcttgtcggac |
1434764 |
T |
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| Q |
305 |
atactggtccgcttcataccgcgaggaaaactcctgtttaccgaatgagtggtccactgtatgctgctcctgcaactgggaatccttttcagaatag |
401 |
Q |
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| T |
1434765 |
atactggtccgcttcataccgcgaggaaaactcctgtttaccgaatgagtggtccactgtatgctactcctgcaactgggaatccttttcagaatag |
1434861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 6e-47; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 96 - 287
Target Start/End: Original strand, 28055279 - 28055469
Alignment:
| Q |
96 |
tttaaaattgttgagattgtacggagacaaatatgttgatgtcttatctatttttcagaatcttctaggaaacatgaatcattttgataaaggtgaaatt |
195 |
Q |
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|||||||||| |||||| |||| |||||||||| ||||||| || ||| | || ||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
28055279 |
tttaaaattgctgagatggtacatagacaaatatattgatgtttt-tctgtcttacagaatcttgaaggaaacatgaatcattttgataaagatgaaatt |
28055377 |
T |
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| Q |
196 |
ccaattctgtcagaaacatgtgcacaacgatctaatgaacctcaggattctaccttctgaagaaacatatcgagcacaccaagtgcttcaat |
287 |
Q |
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| T |
28055378 |
cctattctatcagaaacacatggacaacgatctgatgaacctcaggattctaccttccgaagaaacatatcgaggacacggagtgcttcaat |
28055469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 151 - 287
Target Start/End: Original strand, 28025558 - 28025694
Alignment:
| Q |
151 |
cagaatcttctaggaaacatgaatcattttgataaaggtgaaattccaattctgtcagaaacatgtgcacaacgatctaatgaacctcaggattctacct |
250 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||| |
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| T |
28025558 |
cagaatcttcaaggaaacatgaatcattttgataaagatgaaattctgattctgtcagaaacacatgttcaacgatctcatgaacctcaggattctacct |
28025657 |
T |
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| Q |
251 |
tctgaagaaacatatcgagcacaccaagtgcttcaat |
287 |
Q |
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| T |
28025658 |
tccgaagaaacatatcgaggacacgaagtgcttcaat |
28025694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 94 - 287
Target Start/End: Original strand, 28085876 - 28086068
Alignment:
| Q |
94 |
attttaaaattgttgagattgtacggagacaaatatgttgatgtcttatctatttttcagaatcttctaggaaacatgaatcattttgataaaggtgaaa |
193 |
Q |
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| T |
28085876 |
attttaaaattgctgagatggtaccgagacacgtatactgatgtttt-tctgtttttcagaatcttgaaggaaacatgaatcattttgacaaagatgaaa |
28085974 |
T |
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| Q |
194 |
ttccaattctgtcagaaacatgtgcacaacgatctaatgaacctcaggattctaccttctgaagaaacatatcgagcacaccaagtgcttcaat |
287 |
Q |
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|||| || |||||||||||| ||| |||||||||| |||| |||||||| |||||||| |||||||||||||||| |||| ||||||||||| |
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| T |
28085975 |
ttccgatactgtcagaaacacgtggacaacgatctgatgaccctcaggactctacctttcgaagaaacatatcgaggacacggagtgcttcaat |
28086068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 146 - 287
Target Start/End: Complemental strand, 27927727 - 27927583
Alignment:
| Q |
146 |
tttttcagaatcttctaggaaa---catgaatcattttgataaaggtgaaattccaattctgtcagaaacatgtgcacaacgatctaatgaacctcagga |
242 |
Q |
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|||||| |||||||| |||||| |||||||||||||| |||| ||||||||||||||||||||||||| || |||||||||| ||||||||||||| |
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| T |
27927727 |
tttttctgaatcttcaaggaaattacatgaatcattttgggaaagatgaaattccaattctgtcagaaacacatggacaacgatctgatgaacctcagga |
27927628 |
T |
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| Q |
243 |
ttctaccttctgaagaaacatatcgagcacaccaagtgcttcaat |
287 |
Q |
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| T |
27927627 |
ttctaccttccgaagaaacatatcgaggacacggagtgcttcaat |
27927583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 400
Target Start/End: Original strand, 28086112 - 28086220
Alignment:
| Q |
292 |
aatcttgtcggacatactggtccgcttcataccgcgaggaaaactcctgtttaccgaatgagtggtccactgtatgctgctcctgcaactgggaatcctt |
391 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||| || ||||||||||||| | |||| | ||||||||||||| ||| ||| |
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| T |
28086112 |
aatcttgtcggacatactggtccgcttcgtaccacgaggaaaactcctgttagccaaatgagtggtccattatatgtttctcctgcaactggaaatactt |
28086211 |
T |
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| Q |
392 |
ttcagaata |
400 |
Q |
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| T |
28086212 |
ttcagaata |
28086220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 147 - 282
Target Start/End: Original strand, 27905209 - 27905344
Alignment:
| Q |
147 |
ttttcagaatcttctaggaaacatgaatcattttgataaaggtgaaattccaattctgtcagaaacatgtgcacaacgatctaatgaacctcaggattct |
246 |
Q |
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| T |
27905209 |
ttttcagaatcatcaaggaaacatgaatcattttgaaaaagatgaaattacgaatctgtcagaaacacatccacaacgatccgatgaatctgagaattct |
27905308 |
T |
|
| Q |
247 |
accttctgaagaaacatatcgagcacaccaagtgct |
282 |
Q |
| |
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| |||| ||| |||||||| || |||| ||||||| |
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| T |
27905309 |
aacttccaaaggaacatatcaaggacacaaagtgct |
27905344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 375
Target Start/End: Original strand, 27905393 - 27905476
Alignment:
| Q |
292 |
aatcttgtcggacatactggtccgcttcataccgcgaggaaaactcctgtttaccgaatgagtggtccactgtatgctgctcct |
375 |
Q |
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| T |
27905393 |
aatcttgtcggacatactggtcgtcttcgtaccgcgaggaaaacttccattagccaaatgagtggtccactatatgctactcct |
27905476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 227
Target Start/End: Original strand, 28010852 - 28010964
Alignment:
| Q |
114 |
gtacggagacaaatatgttgatgtcttatctatttttcagaatcttctaggaaacatgaatcattttgataaaggtgaaattccaattctgtcagaaaca |
213 |
Q |
| |
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||||| |||||||||| ||||||| || | | |||| ||||||| || ||||||||||||||||||||| || | ||| ||||| ||| ||||||||||| |
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| T |
28010852 |
gtacgtagacaaatatattgatgttttttatgtttt-cagaatcatcaaggaaacatgaatcattttgaaaatgatgatattccgattttgtcagaaaca |
28010950 |
T |
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| Q |
214 |
tgtgcacaacgatc |
227 |
Q |
| |
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| T |
28010951 |
catccacaacgatc |
28010964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 398
Target Start/End: Original strand, 28055511 - 28055619
Alignment:
| Q |
290 |
cgaatcttgtcggacatactggtccgcttcataccgcgaggaaaactcctgtttaccgaatgagtggtccactgtatgctgctcctgcaactgggaatcc |
389 |
Q |
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||||||||||| |||||||||| |||||| |||| | | ||||||||||||| || ||||||||||||| | ||||| | ||| |||||| ||||| |
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| T |
28055511 |
cgaatcttgtcagacatactgggccgctttgtaccacaaagaaaactcctgttagccaaatgagtggtccattaaatgctacacctctaactggaaatcc |
28055610 |
T |
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| Q |
390 |
ttttcagaa |
398 |
Q |
| |
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||||||||| |
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| T |
28055611 |
ttttcagaa |
28055619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 28025756 - 28025828
Alignment:
| Q |
328 |
aggaaaactcctgtttaccgaatgagtggtccactgtatgctgctcctgcaactgggaatccttttcagaata |
400 |
Q |
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||||||||||| || || ||||||||||||||| |||||| || | |||||||| |||||||||||||||| |
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| T |
28025756 |
aggaaaactccgattagccaaatgagtggtccactatatgctactgcggcaactggaaatccttttcagaata |
28025828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 383
Target Start/End: Complemental strand, 27927539 - 27927448
Alignment:
| Q |
292 |
aatcttgtcggacatactggtccgcttcataccgcgaggaaaactcctgtttaccgaatgagtggtccactgtatgctgctcctgcaactgg |
383 |
Q |
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|||||||| |||||||||||| | |||| || | || ||||||||||||| || ||||||||||||| | | |||| ||||||||||||| |
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| T |
27927539 |
aatcttgttggacatactggttcacttcgtatcacggcgaaaactcctgttagccaaatgagtggtccattatttgcttctcctgcaactgg |
27927448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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