View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13790_high_4 (Length: 201)
Name: NF13790_high_4
Description: NF13790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13790_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 34500685 - 34500836
Alignment:
| Q |
36 |
tgtttattttttataaacaaaaattgcttaggactataaaacttagatatttgtggttgaaacaatctaaaacaaacagc--tagccatcagaaggcgtc |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34500685 |
tgtttattttttataaacaaaaattgcttaggactataaaccttagatatttgtggttgaaacaatctaaaacaaacagctatagccatcagaaggcgtc |
34500784 |
T |
|
| Q |
134 |
taaattttaagtttttaaaagaagctgctaataaattatcatgtgcaaatat |
185 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34500785 |
taaattttaagtttttaaaagaaactgctaataaattatcatgtgcaaatat |
34500836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University