View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13790_low_1 (Length: 549)
Name: NF13790_low_1
Description: NF13790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13790_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 36223410 - 36223944
Alignment:
| Q |
1 |
ataaacttttgctacaaatagcaccatgttccctatgttagataaataaattgccaccttctcattcctttcaagttgcttcatctcatcctgaaaataa |
100 |
Q |
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| T |
36223410 |
ataaacttttgctacaaatagcaccatgttccctatgttagataaataaattgccaccttctcattcctttcaagttgcttcatctcatcctgaaaataa |
36223509 |
T |
|
| Q |
101 |
aaaggtgccatttaggccattttaacaaaccaaatgttcataagaagaagaa-aaaataatgaatgaactcataaatttttataacctctgttaaatttc |
199 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36223510 |
aaaggttccatttaggccattttaacaaaccaattgttcataagaagaaaaataaaataatgaatgaactcataaatttttataacctctgttaaatttc |
36223609 |
T |
|
| Q |
200 |
caggtaatgtgcccaaatcaatatatgagtccatttcttggtaccctttaagaagaatttcctgcctcttataatatttagcaagtttcctttgtctctc |
299 |
Q |
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| T |
36223610 |
caggtaatgtgcccaaatcaatatatgagtccacttcttggtaccctttaagaagaatttcctgcctcttataatatttagcaagtttcctttgtctctc |
36223709 |
T |
|
| Q |
300 |
tgaaggattgaaatgcaaaattcattttagaaacatcaaatacaaaatgcttacatatatgaaaatgttaacaaaaagggttgttgatttaagtactgat |
399 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36223710 |
tgaaagattgaaatacaaaattcattttagaaacatcaaatacaaaatgcatacatatatgaaaatgttaacaaaaagggttgttcatttaagtactgat |
36223809 |
T |
|
| Q |
400 |
tgttcttaagaataatccaaagccaaaatgagactccatttgcctttccggtatgcgatgttcatccatattgatcctccatgaaggttgcctagccata |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36223810 |
tgttcttaagaataatccaaagccaaaatgagactccatttgcctttccggtatgcgatgttcatccatattgatcctccatgaaggttgcctagccata |
36223909 |
T |
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| Q |
500 |
gacacattctcagaagctatgtttggggaaagaag |
534 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
36223910 |
gacacattctcagaagctatgtttggggaaagaag |
36223944 |
T |
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