View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13790_low_2 (Length: 474)
Name: NF13790_low_2
Description: NF13790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13790_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 17 - 463
Target Start/End: Original strand, 38696720 - 38697166
Alignment:
| Q |
17 |
acaaacttttagaaagatcaagaaatatggcgcagttaaataaaattaacaacgctgcagtgctccctaatctcaccttgagaacctgtcaacacatcca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38696720 |
acaaacttttagaaagatcaagaaatatggtgcagttaaataaaattaacaacgctgcagtactccctaatctcaccttgagaacctgtcaacacatcca |
38696819 |
T |
|
| Q |
117 |
agttacccatatgcaccattgccttggcaaacttcacattccagattgcagcatgtctggcattttttaacaccattctcttagttaagccactattaag |
216 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38696820 |
agttacccatatgtaccattgccttggcaaacttcacattccagattgcagcatgtctggcattttttaacaccattctcttagttaagccactattaac |
38696919 |
T |
|
| Q |
217 |
caatatttgatccgaagttaataaaccacggttattcttcaacctcttatagtacatgttgtccaaatcattaggcgtggaaccatcaaacgccactgtt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38696920 |
caatatttgatccgaagttaataaaccacggttattcttcaacctcttatagtacatgttgtccaaatcattaggcgtggaaccatcaaacgccactgtt |
38697019 |
T |
|
| Q |
317 |
gagtctaggttctgtatctgtgactgtgattgttgtgactgtggtggcggacacttggatctcaacaacctagcaaagtcagggtccatagaaggatctt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38697020 |
gagtctaggttctgtatctgtgactgtgattgttgtgactgtggtggcggacacttggatctcaacaacctagcaaagtcagggtccatagaaggatctt |
38697119 |
T |
|
| Q |
417 |
gaggaaaagttgcattgaaagagtataatcgttttgagaatgaagaa |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38697120 |
gaggaaaagttgcattgaaagagtataatcgttttgagaatgaagaa |
38697166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 60 - 463
Target Start/End: Complemental strand, 38629497 - 38629115
Alignment:
| Q |
60 |
aattaacaacgctgcagtgctccctaatctcaccttgagaacctgtcaacacatccaagttacccatatgcaccattgccttggcaaacttcacattcca |
159 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| ||||||||||| |||||| ||| ||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
38629497 |
aattaacaacgctacaacgctccctaatctcaccttcagaacctgtcagcacatctaaggaacccatatgcaccatggctttggcaaacttcacattcca |
38629398 |
T |
|
| Q |
160 |
gattgcagcatgtctggcattttttaacaccattctcttagttaagccactattaagcaatatttgatccgaagttaataaaccacggttattcttcaac |
259 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38629397 |
gattgcagcatgtctagcattttttaacaccattctcctagttaagccactattaagcaatgtttgatccgaagttaataaaccacgattattcttcaac |
38629298 |
T |
|
| Q |
260 |
ctcttatagtacatgttgtccaaatcattaggcgtggaaccatcaaacgccactgttgagtctaggttctgtatctgtgactgtgattgttgtgactgtg |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| | |||| |||| || || | |||| |||||||| |
|
|
| T |
38629297 |
ctcttatagtacatgttgtccaaatcattaggcgtgctaccatcaagcaccacagttgggtttatgctctg---------------------tgactgtg |
38629219 |
T |
|
| Q |
360 |
gtggcggacacttggatctcaacaacctagcaaagtcagggtccatagaaggatcttgaggaaaagttgcattgaaagagtataatcgttttgagaatga |
459 |
Q |
| |
|
|||| |||||||| ||| | |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38629218 |
gtggtggacacttagattttaacaacctagcaaagttagggtccatagaaggatcttgaggaaaagttaaattgaaagagtataatcgttttgagaatga |
38629119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 210 - 303
Target Start/End: Complemental strand, 20516684 - 20516587
Alignment:
| Q |
210 |
tattaagcaatatttgatccgaagttaataaaccacggtt----attcttcaacctcttatagtacatgttgtccaaatcattaggcgtggaaccatc |
303 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20516684 |
tattaagcaacgtttgatctgaagttaataaaccatggttgttctttcttcaacctcttatagtacatgttgtccaaatcaataggcgtggaaccatc |
20516587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 20516812 - 20516727
Alignment:
| Q |
17 |
acaaacttttagaaagatcaagaaatatggcgcagttaaataaaattaacaacgctgcagtgctccctaatctcaccttgagaacc |
102 |
Q |
| |
|
|||||||||| | ||| | ||||||| ||| |||||||| | ||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
20516812 |
acaaactttttggaaggtgaagaaatgtggtgcagttaattgaaattaacaacactgcagtgttccctaatctcaccttgagaacc |
20516727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 8234727 - 8234650
Alignment:
| Q |
121 |
acccatatgcaccattgccttggcaaacttcacattccag--attgcagcatgtctggcattttttaacaccattctc |
196 |
Q |
| |
|
||||||||||||||| || ||||||||||| || |||||| ||||||||||||||| | ||||||||||||||||| |
|
|
| T |
8234727 |
acccatatgcaccatagctttggcaaactttactttccagaaattgcagcatgtctgaaagtttttaacaccattctc |
8234650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 13404466 - 13404543
Alignment:
| Q |
121 |
acccatatgcaccattgccttggcaaacttcacattcc--agattgcagcatgtctggcattttttaacaccattctc |
196 |
Q |
| |
|
||||||||||||||| || ||||||||||| || |||| |||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
13404466 |
acccatatgcaccatagctttggcaaactttactttccagagattgcagctagtctgaaagtttttaacaccattctc |
13404543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 36981611 - 36981688
Alignment:
| Q |
121 |
acccatatgcaccattgccttggcaaacttcacattccaga--ttgcagcatgtctggcattttttaacaccattctc |
196 |
Q |
| |
|
||||||||||||| | || ||||||||||| || ||||||| ||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
36981611 |
acccatatgcaccttggctttggcaaactttactttccagagattgtagcgtgtctgaaattttttaacaccattctc |
36981688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University