View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13790_low_3 (Length: 368)

Name: NF13790_low_3
Description: NF13790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13790_low_3
NF13790_low_3
[»] chr4 (2 HSPs)
chr4 (13-349)||(3283362-3283698)
chr4 (191-253)||(18194754-18194816)
[»] chr2 (6 HSPs)
chr2 (111-248)||(1175506-1175640)
chr2 (191-267)||(18633864-18633940)
chr2 (174-253)||(4700517-4700596)
chr2 (111-153)||(18633945-18633987)
chr2 (59-104)||(4701258-4701303)
chr2 (68-104)||(1175744-1175780)
[»] scaffold0002 (2 HSPs)
scaffold0002 (191-253)||(286230-286292)
scaffold0002 (191-253)||(292586-292648)
[»] chr5 (1 HSPs)
chr5 (168-267)||(12593353-12593452)
[»] chr3 (1 HSPs)
chr3 (198-252)||(395999-396053)


Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 3283698 - 3283362
Alignment:
Q  13 aatatttaggtcaactcccatcgtgtctgtttgcctgcatttctagaaattaggttcaaggaatcgaacctagaaccataaattgatgtatattgatcaa 112  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3283698 aatatttgggtcaactcccatcgtgtctgtttgcctgcatttctagaaattaggttcaaggaatcgaacctagaaccataaattgatgtatattgatcaa 3283599  T
Q  113 aatagtaattattaggcaaaaatcagagattttctatgacagtaatatctcttactttttatgtgctttctagaggcgaacattattatttcttattttt 212  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3283598 aatagtaattattaagcaaaaatcagagattttctatgacagtattatctcttactttttatgtgctttctagaggcgaacattattatttcttattttt 3283499  T
Q  213 agtatgatttagtacatagtttctttcaaaattcagccacatatgaacatgatgtggggcggccttgtcactaatcagcaaaacttttgagtcaggatta 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3283498 agtatgatttagtacatagtttctttcaaaattcagccacatatgaacatgatgtggggcggccttgtcactaatcagcaaaacttttgagtcaggatta 3283399  T
Q  313 tgcattgtgattcaaatatataaacttaacattcact 349  Q
    |||||||||||||||||||||||||||||||||||||    
T  3283398 tgcattgtgattcaaatatataaacttaacattcact 3283362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 18194816 - 18194754
Alignment:
Q  191 aacattattatttcttatttttagtatgatttagtacatagtttctttcaaaattcagccaca 253  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||||||| ||| || |||||||    
T  18194816 aacattattttttcttatttttagtataatttagttcatagtttctttgaaattttagccaca 18194754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 111 - 248
Target Start/End: Complemental strand, 1175640 - 1175506
Alignment:
Q  111 aaaatagtaattattaggcaaaaatcagagattttctatgacagtaatatctcttactttttatgtgctttctagaggcgaacattattatttcttattt 210  Q
    |||||||||| |||||||||||| |||||| |||||||||||| || | ||||||| ||||| |||  ||| ||||| | ||||||||||||||||||||    
T  1175640 aaaatagtaagtattaggcaaaattcagagtttttctatgaca-tattgtctcttaatttttctgt--tttgtagagacaaacattattatttcttattt 1175544  T
Q  211 ttagtatgatttagtacatagtttctttcaaaattcag 248  Q
    ||||||||||||||| |||| ||||||||| |||||||    
T  1175543 ttagtatgatttagttcataatttctttcataattcag 1175506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 267
Target Start/End: Complemental strand, 18633940 - 18633864
Alignment:
Q  191 aacattattatttcttatttttagtatgatttagtacatagtttctttcaaaattcagccacatatgaacatgatgt 267  Q
    |||||||||||||||||| |||| |||||||||||  ||||||||||||| |||| ||||||| |||||||| ||||    
T  18633940 aacattattatttcttatctttaatatgatttagttgatagtttctttcataatttagccacacatgaacatcatgt 18633864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 4700596 - 4700517
Alignment:
Q  174 tgtgctttctagaggcgaacattattatttcttatttttagtatgatttagtacatagtttctttcaaaattcagccaca 253  Q
    ||||||||||| || | |||| |||||||||||||||||||||| ||||||| |||||||||||  | ||||||||||||    
T  4700596 tgtgctttctaaagacaaacaatattatttcttatttttagtataatttagttcatagtttcttatataattcagccaca 4700517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 18633987 - 18633945
Alignment:
Q  111 aaaatagtaattattaggcaaaaatcagagattttctatgaca 153  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  18633987 aaaatagtaattattaggcaaaaatcagagtttttctatgaca 18633945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 4701303 - 4701258
Alignment:
Q  59 aaattaggttcaaggaatcgaacctagaaccataaattgatgtata 104  Q
    |||||| ||| |||||||| ||||||||||||||| ||||||||||    
T  4701303 aaattaagtttaaggaatcaaacctagaaccataacttgatgtata 4701258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 1175780 - 1175744
Alignment:
Q  68 tcaaggaatcgaacctagaaccataaattgatgtata 104  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  1175780 tcaagtaatcgaacctagaactataaattgatgtata 1175744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 286230 - 286292
Alignment:
Q  191 aacattattatttcttatttttagtatgatttagtacatagtttctttcaaaattcagccaca 253  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||||||| ||| || |||||||    
T  286230 aacattattttttcttatttttagtataatttagttcatagtttctttgaaattttagccaca 286292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 292586 - 292648
Alignment:
Q  191 aacattattatttcttatttttagtatgatttagtacatagtttctttcaaaattcagccaca 253  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||||||| ||| || |||||||    
T  292586 aacattattttttcttatttttagtataatttagttcatagtttctttgaaattttagccaca 292648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 267
Target Start/End: Complemental strand, 12593452 - 12593353
Alignment:
Q  168 tttttatgtgctttctagaggcgaacattattatttctta----tttttagtatgatttagtacatagtttctttcaaaattcagccacatatgaacatg 263  Q
    ||||||||||  || ||||| | |||||||||||||||||    |||||||||||||||||| |||||||||||    |||||||||||| ||||||||     
T  12593452 tttttatgtgtcttttagagacaaacattattatttcttacttttttttagtatgatttagttcatagtttctt----aattcagccacacatgaacatt 12593357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 395999 - 396053
Alignment:
Q  198 ttatttcttatttttagtatgatttagtacatagtttctttcaaaattcagccac 252  Q
    |||||||||||||||||||| ||||||  |||||||||||||| |||| ||||||    
T  395999 ttatttcttatttttagtataatttagctcatagtttctttcataatttagccac 396053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University