View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13790_low_4 (Length: 296)
Name: NF13790_low_4
Description: NF13790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13790_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 21 - 280
Target Start/End: Original strand, 33095148 - 33095407
Alignment:
| Q |
21 |
aagacaccttctcctattatcaatcctcctaatgttccttatactcctccgaaagaaccttctcctggaaatcaaccaccatatgtaccaataataccac |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33095148 |
aagacaccttctcctattatcaatcctcctaatgttccttatactcctccgaaaacaccttctcctgaaaatcaaccaccatatgtaccaataataccac |
33095247 |
T |
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| Q |
121 |
caaaaactccttctccaatctatagtcctccaaatactccttatacacctcccaaaagtactcctccctcacctaatcaacctccctatgttcctccccc |
220 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
33095248 |
caaaaactccttctccaatctatagtcctcctaatactccttatacacctcccaaaagtactcctccctcacctaatcaacctccctatgttcctacacc |
33095347 |
T |
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| Q |
221 |
tccaaaaactccttcacctatttacaatcctccaaatgttccttatactcctccaaaaac |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33095348 |
tccaaaaactccttcacctatttacaatcctccaaatgttccttatactcctccaaaaac |
33095407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 33095358 - 33095467
Alignment:
| Q |
27 |
ccttctcctattatcaatcctcctaatgttccttatactcctccgaaagaaccttctcctggaaatcaaccaccatatgtaccaataataccaccaaaaa |
126 |
Q |
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||||| |||||| ||||||||| |||||||||||||||||||| ||| ||| |||||| | ||||||||||| ||||||||||| | ||||||||||| |
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| T |
33095358 |
ccttcacctatttacaatcctccaaatgttccttatactcctccaaaaacaccatctcctcgcaatcaaccaccttatgtaccaattacaccaccaaaaa |
33095457 |
T |
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| Q |
127 |
ctccttctcc |
136 |
Q |
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|||||||||| |
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| T |
33095458 |
ctccttctcc |
33095467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 33095069 - 33095161
Alignment:
| Q |
44 |
tcctcctaatgttccttatactcctccgaaagaaccttctcctggaaatcaaccaccatatgtaccaataataccaccaaaaactccttctcc |
136 |
Q |
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|||||| |||||||| ||||||||||| || | |||||||||||||||||||||||||||||| ||||||| ||||||||| || |||||||| |
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| T |
33095069 |
tcctcccaatgttccctatactcctccaaaggtaccttctcctggaaatcaaccaccatatgtgccaataacaccaccaaagacaccttctcc |
33095161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 33103722 - 33103765
Alignment:
| Q |
90 |
aatcaaccaccatatgtaccaataataccaccaaaaactccttc |
133 |
Q |
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| T |
33103722 |
aatcaaccaccatatgtgccaattacaccaccaaaaactccttc |
33103765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 33095145 - 33095203
Alignment:
| Q |
222 |
ccaaaaactccttcacctatttacaatcctccaaatgttccttatactcctccaaaaac |
280 |
Q |
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||||| || ||||| |||||| ||||||||| |||||||||||||||||||| ||||| |
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| T |
33095145 |
ccaaagacaccttctcctattatcaatcctcctaatgttccttatactcctccgaaaac |
33095203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 33095451 - 33095501
Alignment:
| Q |
222 |
ccaaaaactccttcacctatttacaatcctccaaatgttccttatactcct |
272 |
Q |
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|||||||||||||| |||||| ||| |||||| |||||||| ||||||||| |
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| T |
33095451 |
ccaaaaactccttctcctattcacactcctcctaatgttccatatactcct |
33095501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 33103812 - 33103858
Alignment:
| Q |
90 |
aatcaaccaccatatgtaccaataataccaccaaaaactccttctcc |
136 |
Q |
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||||||||||| ||||| ||||| | ||||||||||||||||||||| |
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| T |
33103812 |
aatcaaccaccttatgttccaattacaccaccaaaaactccttctcc |
33103858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 33095046 - 33095098
Alignment:
| Q |
225 |
aaaactccttcacctatttacaatcctccaaatgttccttatactcctccaaa |
277 |
Q |
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||||| |||||||||||| | | |||||| |||||||| |||||||||||||| |
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| T |
33095046 |
aaaacaccttcacctattcatagtcctcccaatgttccctatactcctccaaa |
33095098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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