View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_high_15 (Length: 332)
Name: NF13791_high_15
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 50663315 - 50663642
Alignment:
| Q |
1 |
aaacaactatgtaaatcaaaggaagtttaaagaatcaaggttataca--atgacttaaaattggccaatcatcataatgacattatttatttcaaacata |
98 |
Q |
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| T |
50663315 |
aaacaactatgtaaatcaaaggaagtttaaagaatcaaggttatacacaatgacttaaaattggccaatcatcataatgacattatttatttcaaacata |
50663414 |
T |
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| Q |
99 |
cactgtatactagaacaatgacataataaggatgaacattaacttttgtgcaatcaacttatacagaattgtaaaagtttctcaacctaccaccttcgag |
198 |
Q |
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| T |
50663415 |
cactgtatactagaacaatgacataataaggataaacattaacttttgtgcaatcaacttatacagaattgtaaaagtttctcaacctaccaccttcgag |
50663514 |
T |
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| Q |
199 |
tgtttgtttagggagatcatagatttttcaaatgttcaagcaactccttttatttttccctattatccaatttcggataacatagatataataa--tcac |
296 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
50663515 |
tgtttgttcagggagatcatagatttttcaaatgttcaagcaactccttttgtttttccctattatccactttcggataacatagatataataatctcac |
50663614 |
T |
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| Q |
297 |
tctctactgcaaatctttgaagtataat |
324 |
Q |
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| T |
50663615 |
tctctactgcaaatctttgaagtataat |
50663642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 50653831 - 50653901
Alignment:
| Q |
50 |
gacttaaaattggccaatcatcataatgacattatttatttcaaacatacactgtatactagaacaatgacata |
123 |
Q |
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| T |
50653831 |
gacttaaaagtggcccatcatcataatga---tatttatttcaaacacacaatgtatactagaacaatgacata |
50653901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 50654001 - 50654052
Alignment:
| Q |
152 |
tcaacttatacagaattgtaaaagtttctcaacctaccaccttcgagtgttt |
203 |
Q |
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| T |
50654001 |
tcaacttctacggaattgtaaaactttctcaacctaccaccttaaagtgttt |
50654052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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