View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_high_16 (Length: 325)
Name: NF13791_high_16
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 39428906 - 39429204
Alignment:
| Q |
13 |
aaaatgtaaccttagctccacctgcaaaa-aatatttcagtccatgttatctccaagacctttgacacttagtaatatttttgttatcgaaggaacataa |
111 |
Q |
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| T |
39428906 |
aaaatgtaaccttagctccacctgcaaaaaaatatttcagtccatgttatctccaagacctttgacacttagtaatatttttgttatcgaaggaacataa |
39429005 |
T |
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| Q |
112 |
tctgtttgtcaaatataataaaggagaagcagttttaccaagaatagatcgaacagcgtccatgtaagtatagtttctcttgccggaatcggggtcgccg |
211 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39429006 |
tctgtttgtcaaatataataaaggagaagcagtgttaccaagaatagagcgaacagcgtccatgtaagtatagtttctcttgccggaatgggggtcgccg |
39429105 |
T |
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| Q |
212 |
gcacgataacaatcagcaagaaaggaagaagtagagacggtaaccaaagagaataaaatcatgacagcaggaccagcaatccaacctagctgagcaatg |
310 |
Q |
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| T |
39429106 |
gcacgataacaatcagcaagaaaggaagaagtagagacggtaaccaaagagaataaaatcatgacagcaggaccagcaatccaacctagctgagcaatg |
39429204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 146 - 306
Target Start/End: Complemental strand, 6249553 - 6249408
Alignment:
| Q |
146 |
ttaccaagaatagatcgaacagcgtccatgtaagtatagtttctcttgccggaatcggggtcgccggcacgataacaatcagcaagaaaggaagaagtag |
245 |
Q |
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||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||| |||| |||||||||| ||||| |
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| T |
6249553 |
ttaccaagaatggagcgaacagcgtccatgtaagtatattttctcttgccggaatcagggtcaccggtgcgataacaat---------------aagtat |
6249469 |
T |
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| Q |
246 |
agacggtaaccaaagagaataaaatcatgacagcaggaccagcaatccaacctagctgagc |
306 |
Q |
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| T |
6249468 |
aggctgtaaccaaagagaataaaatcatgacagcaggaccagcaacccaacctagctgagc |
6249408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 6249721 - 6249672
Alignment:
| Q |
13 |
aaaatgtaaccttagctccacctgcaaaaaatatttcagtccatgttatc |
62 |
Q |
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|||| |||||||| ||||||||||||||| | ||||||||||| |||||| |
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| T |
6249721 |
aaaacgtaacctttgctccacctgcaaaatacatttcagtccacgttatc |
6249672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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