View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_high_17 (Length: 319)
Name: NF13791_high_17
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 29 - 303
Target Start/End: Original strand, 28105113 - 28105384
Alignment:
| Q |
29 |
cactacctttatttcatccactatctcaccataatctctttgacctattcttgaatatatgatcattttgcgcctacagaataacccaaaccagtgccaa |
128 |
Q |
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| T |
28105113 |
cactacctttatttcatccactatctcaccataatctctt-gacctattcttgaatatatgatcatttttcgcctacagaataacccaaaccagtgccaa |
28105211 |
T |
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| Q |
129 |
attaaccaataaccccttctaaacttcttggaccgagactctcctataaaacattccaaatgtacaaaaacaaaaggtttgatggagtaat-aaaaccaa |
227 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
28105212 |
attaaccaataaccccttctaaacttcttcgaccgagactctcctataaaacattccaaatgtacaaaa--aaaaggtttgatggagtaataaaaaccaa |
28105309 |
T |
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| Q |
228 |
taccaagccatctaaacaccaacgaccacactcttaagggccctttctcagaacagaaacaacccatctaaatact |
303 |
Q |
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|||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28105310 |
taccaacccatctaaacaccaacggccacactc-taagggccctttctcagaacagaaacaacccatctaaatact |
28105384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 71 - 303
Target Start/End: Complemental strand, 28088422 - 28088195
Alignment:
| Q |
71 |
acctattcttgaatatatgatcattttgcgcctacagaataacccaaaccagtgccaaattaaccaataaccccttctaaacttcttggaccgagactct |
170 |
Q |
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| T |
28088422 |
acctattcctgaatatatgatcgtttcatgccttccgaagaacccaaaccagtgccgaattaaccaataactccttctaagcttctacaactgagcctcc |
28088323 |
T |
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| Q |
171 |
cctataaaacattccaaatgtacaaaaacaaaaggtttgatggagtaataaaaccaataccaagccatctaaacaccaacgaccacactcttaagggccc |
270 |
Q |
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| T |
28088322 |
tctataaaacattccaaatgtagaaaaaa-----gtttgatggagtaataaaaccaataccaagccatctaaacactaacgaccacactcttaagggccc |
28088228 |
T |
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| Q |
271 |
tttctcagaacagaaacaacccatctaaatact |
303 |
Q |
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| T |
28088227 |
tttctcagaacagaaacaacccatctaaatact |
28088195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 26642349 - 26642442
Alignment:
| Q |
29 |
cactacctttatttcatccactatctcaccataatctctttgacctattcttgaatatatgatcattttgcgcctacagaataacccaaaccagtgc |
125 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26642349 |
cactacctttatttcatccactatc--accataatctctt-gacctattcttgaatatatgatcattttgcgcctacagaataacccaaaccagtgc |
26642442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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