View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_high_27 (Length: 240)
Name: NF13791_high_27
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 44 - 223
Target Start/End: Complemental strand, 50663170 - 50662992
Alignment:
| Q |
44 |
ctcacagttgttttctttaatgtaaaaaacattgtccatatttattttgattcagatataaaaatgtcagcggtgaatatgtccaccataagacttccga |
143 |
Q |
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| T |
50663170 |
ctcacagttgttttctttaatgtaaaaaacattgtccatatttattttgattcaga-ataaaaatgtcagcggtgaatatgtccaccatgagacttccga |
50663072 |
T |
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| Q |
144 |
cagcttctttgcacggaacggcttcctctaggacatcttgtgctcttctgaagaatccatcaactttgagatctgtgaag |
223 |
Q |
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| T |
50663071 |
cagcttctttgcacggaacggcttcctctaggacatcttgtgctcttctgaagaatccatcaactttgagatctgtgaag |
50662992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 50653478 - 50653336
Alignment:
| Q |
81 |
atatttattttgattcagatataaaaatgtcagcggtgaatatgtccaccataagacttccgacagcttctttgcacggaacggcttcctctaggacatc |
180 |
Q |
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| T |
50653478 |
atatttatttttattcaggtatgaaaatgtcagctgtgaatatgtccgctgtgagacttacaacagcttcattgtacggaacagcgccgtctcggacatc |
50653379 |
T |
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| Q |
181 |
ttgtgctcttctgaagaatccatcaactttgagatctgtgaag |
223 |
Q |
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| T |
50653378 |
ttgtgctctgaggaagagtccatcaagtttgagatctgtgaag |
50653336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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