View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_high_28 (Length: 237)
Name: NF13791_high_28
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6190952 - 6190732
Alignment:
| Q |
1 |
tttccaaaaactttgtcatgactaaaaatgtggttgaggatcacattaatgctttgcgaaaaagagaaaagcttgtgcagctaatgagagatggtaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6190952 |
tttccaaaaactttgtcatgactaaaaatgtggttgaggatcacattaatgctttgcgaaaaagagaaaagcttgtgcagctaatgagagatggtaagaa |
6190853 |
T |
|
| Q |
101 |
acagaagaaatcaatgatgaaagaaaagagtcagtttgaggatgaagccaagcgtctcgtggaagagggtgaaaaggtggaggaaaaaattagaatactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6190852 |
acagaagaaatcaatgatgaaagaaaagagtcagtttgaggatgaagccaagcgtctcgtggaagagggtgaaaaggtggaggaaaaaattagaatactt |
6190753 |
T |
|
| Q |
201 |
gttgagcaaaagaacagtatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
6190752 |
gttgagcaaaagaacagtatt |
6190732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 6183935 - 6183731
Alignment:
| Q |
10 |
actttgtcatgactaaaaatgtggttgaggatcacattaatgctttgcgaaaaagagaaaagcttgtgcagctaatgagagatggtaagaaacagaagaa |
109 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| | | | ||| |||||||||| |||||| | ||| ||||| ||||||||||||| | |
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| T |
6183935 |
actttgtcatgactaaaaatgtggttgatgatcacattaatgctatacaacaaaaagaaaagcttatgcagcgagtgacagatgctaagaaacagaagga |
6183836 |
T |
|
| Q |
110 |
atcaatgatgaaagaaaagagtcagtttgaggatgaagccaagcgtctcgtggaagagggtgaaaaggtggaggaaaaaattagaatacttgttgagcaa |
209 |
Q |
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| T |
6183835 |
atcaaaacagaaagaaaagagtcagtttgaggatgaagctaagcgtgtcgaggaagaggttgaaaagacggatgaaaaaattagaatacttgtcgagcaa |
6183736 |
T |
|
| Q |
210 |
aagaa |
214 |
Q |
| |
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||||| |
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| T |
6183735 |
aagaa |
6183731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 6135033 - 6134929
Alignment:
| Q |
10 |
actttgtcatgactaaaaatgtggttgaggatcacattaatgctttgcgaaaaagagaaaagcttgtgcagctaatgagagatggtaagaaacagaagaa |
109 |
Q |
| |
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|||||||| |||||| ||| ||||||||||||||||| |||||||| || |||||||||||||| |||||| | ||||||||| ||| ||||||||| | |
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| T |
6135033 |
actttgtcgtgactagaaaagtggttgaggatcacatgaatgctttacggcaaagagaaaagcttatgcagcgagtgagagatgctaataaacagaagga |
6134934 |
T |
|
| Q |
110 |
atcaa |
114 |
Q |
| |
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||||| |
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| T |
6134933 |
atcaa |
6134929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 37454662 - 37454871
Alignment:
| Q |
10 |
actttgtcatgactaaaaatgtggttgaggatcacattaatgctttgcgaaaaagagaaaagcttgtgcagctaatgagagatggtaagaaacagaagaa |
109 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
37454662 |
actttgtcatgactaaaaatgctgttgaggatcacattaatgctttgcaaaaaagagaaaagcttgtgcaactaataagagatggtaagaaacagaagaa |
37454761 |
T |
|
| Q |
110 |
atcaatgatgaaagaaaagagtcagtttgaggatgaagccaagcgtctcgtggaagagggtgaaaaggtggaggaaaaaattagaatacttgttgagcaa |
209 |
Q |
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|||||||| |||||||||||||| |||||||||||||| |||| | |||| |||||| ||||||||| |||| ||||| |||||||| |||||||||||| |
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| T |
37454762 |
atcaatgaagaaagaaaagagtcggtttgaggatgaagacaagaggctcgcggaagaaggtgaaaagttggacgaaaagattagaattcttgttgagcaa |
37454861 |
T |
|
| Q |
210 |
aagaacagta |
219 |
Q |
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||||| |||| |
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| T |
37454862 |
aagaaaagta |
37454871 |
T |
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