View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13791_high_3 (Length: 598)
Name: NF13791_high_3
Description: NF13791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13791_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 16201906 - 16202281
Alignment:
| Q |
17 |
acttctctgtcaaggaagctgcaatattctttccatattctgcaggtgaaactccagaattgttctcttcataggttgtcattttctctgtctcagttgc |
116 |
Q |
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| T |
16201906 |
acttctctgtcaaggaagctgcaatattctttccatattctgcaggtgagactccagaattgttctcttcgtaggttgtcattctctctgtctcagttgc |
16202005 |
T |
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| Q |
117 |
acccttttcgccgaagccaagctttgaggctactgcgtttttagctgatgcagctttatcagctattgcagatgttgcagatgagattttctctgtatag |
216 |
Q |
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| T |
16202006 |
acccttttcgccgaagccaagctttgaggctactgcgtttttagctgatgcagctttatcagctattgcagatgttgcagatgaaattttctctgtatag |
16202105 |
T |
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| Q |
217 |
ctactctgatttgaccgagtttcatttgttggtactcctgtttcgccatatccaagctttgaagcaaccgcatttttagctgtggcggctttgtcagcta |
316 |
Q |
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| T |
16202106 |
ctactctgattcgacggagtttcatttgttgttactcctgtttcgccatatccaagctttgaagcaaccgcatttttagctgtggcggctttgtcagcta |
16202205 |
T |
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| Q |
317 |
ttgtagatgtgtaactgctttggttcgatggagtttcaccagttgttgtttcgccttcttgaccgtatccaagctt |
392 |
Q |
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| T |
16202206 |
ttgtagatgtgtaacttctttggttcaatggagtatcgccagctgttgttttgccttcttcaccgtacccaagctt |
16202281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 268 - 591
Target Start/End: Original strand, 16202274 - 16202597
Alignment:
| Q |
268 |
ccaagctttgaagcaaccgcatttttagctgtggcggctttgtcagctattgtagatgtgtaactgctttggttcgatggagtttcaccagttgttgttt |
367 |
Q |
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| T |
16202274 |
ccaagctttgaagcaaccgtatttttagctgtggcggctttgtcagctattgtagatgtgtaactgctttggttcgatggagtttcaccagttgttgttt |
16202373 |
T |
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| Q |
368 |
cgccttcttgaccgtatccaagcttcgatgccacggcgtttttagccaaggcagctttgtcaatgacagcagctgtcacagaggggtaactggtctggtt |
467 |
Q |
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| T |
16202374 |
cgccttcttcaccgtatccaagcttcgatgccacagcgtttttagccaaggcagctttgtcaatgacagcagctgtcacagaggggtaactggtctggtt |
16202473 |
T |
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| Q |
468 |
tgattgcctttcactaggtgttgtttcatttgtttcaccgtatccaagctttgaagcaacggcatttttagcaccagcagctttatcggtgactgcagaa |
567 |
Q |
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| T |
16202474 |
tgattgcctttcaccaggtgttgtttcatttgtttcaccgtatccaagctttgaagcaacggcatttttagcaccagcagctttgtcggtgactgcagaa |
16202573 |
T |
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| Q |
568 |
gctgcattatagattttgtctgtg |
591 |
Q |
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| T |
16202574 |
gctgcattatagattttgtctgtg |
16202597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 324 - 591
Target Start/End: Original strand, 16202594 - 16202864
Alignment:
| Q |
324 |
tgtgtaactgctttggttcgatggagtttcaccagttgttgtttcgccttcttgaccgtatccaagcttcgatgccacggcgtttttagccaaggcagct |
423 |
Q |
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| T |
16202594 |
tgtgtagctgctctggttagtaggagtttcaccagttgttgtttcacctccttcaccgtatccaagcttcgacgtgacagcgtttttagccaaggcggct |
16202693 |
T |
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| Q |
424 |
ttgtcaatgacagcagctgtcacagaggggtaactggtctggtttgattgcctttcactaggtgttgtttcatttgtttca---ccgtatccaagctttg |
520 |
Q |
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| T |
16202694 |
ttgtctatgactgcagctgttacagatgggtaactgacctggcttgttggcctttcaccagttgttgtctcgcctgtttcactgccatatccaatctttg |
16202793 |
T |
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| Q |
521 |
aagcaacggcatttttagcaccagcagctttatcggtgactgcagaagctgcattatagattttgtctgtg |
591 |
Q |
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| T |
16202794 |
aagcaaccgcgtttgtagcatcagcggctttgttagtgactgcagacgctgcagagtagattttgtctgtg |
16202864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 591
Target Start/End: Original strand, 16202919 - 16203002
Alignment:
| Q |
508 |
tatccaagctttgaagcaacggcatttttagcaccagcagctttatcggtgactgcagaagctgcattatagattttgtctgtg |
591 |
Q |
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| T |
16202919 |
tatccaagcttcgaagctaccgcatttttagcaccggcagctgtgtcggcaattgcagaagttgcagagtagattttgtctgtg |
16203002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 539
Target Start/End: Original strand, 16202144 - 16202185
Alignment:
| Q |
498 |
tgtttcaccgtatccaagctttgaagcaacggcatttttagc |
539 |
Q |
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| T |
16202144 |
tgtttcgccatatccaagctttgaagcaaccgcatttttagc |
16202185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 16202504 - 16202545
Alignment:
| Q |
255 |
tgtttcgccatatccaagctttgaagcaaccgcatttttagc |
296 |
Q |
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| T |
16202504 |
tgtttcaccgtatccaagctttgaagcaacggcatttttagc |
16202545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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